FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932452_ssr138 microsatellite FC932452_ssr138:138..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig777 contig Ccv1_Contig777:11..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.042e-77
Identity = 140/158 (88.61%), Postives = 150/158 (94.94%), Query Frame = 1
Query:  238 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TF+  GRWL+ELR+HTDPNI+VMLIGNK+DLRHLV VSTEDGKAFAE+ESLYFMETSAL
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.654e-76
Identity = 138/158 (87.34%), Postives = 150/158 (94.94%), Query Frame = 1
Query:  238 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            M GY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++L +D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.654e-76
Identity = 138/158 (87.34%), Postives = 149/158 (94.30%), Query Frame = 1
Query:  238 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            MAGY+ DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++ +++ KVVKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATF+N  RWLRELR HTDPNI+VMLIGNK DLRHLVAV TE+ KAFAE+ESLYFMETSAL
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.997e-76
Identity = 137/158 (86.71%), Postives = 150/158 (94.94%), Query Frame = 1
Query:  238 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            MAGY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+SL IDNKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T++NV RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAVST++ K  AE+E LYFMETSAL
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.705e-75
Identity = 136/158 (86.08%), Postives = 151/158 (95.57%), Query Frame = 1
Query:  238 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            MAGY+ D+EYDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATRSL +D+KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV  WL+ELR HTDPNI+VML+GNK+DLRHLVAV TED K+FAE+ESLYFMETSAL
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 4.961e-75
Identity = 134/157 (85.35%), Postives = 153/157 (97.45%), Query Frame = 1
Query:  241 AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            AGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL++D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV RWL+ELR+HTDPNI+VML+GNK+DLRHLVAV T++GKAFAE+ESLYFMETSAL
Sbjct:    3 AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSAL 159          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.216e-74
Identity = 134/158 (84.81%), Postives = 151/158 (95.57%), Query Frame = 1
Query:  238 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR+L++D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+NV RWL+EL+ HTDPNI+VML+GNK+DLRHL+AV TEDGK++AEQESL FMETSAL
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.706e-72
Identity = 127/156 (81.41%), Postives = 148/156 (94.87%), Query Frame = 1
Query:  244 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            GY+ +++YDYLFKLVLIGDSGVGKSNLLSRF++NEFNLESKSTIGVEFATRS+R+D+K+VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRH TF+NV RWL+ELR+HTD NI++ML+GNK DLRHL AVSTED KAFAE+E+ +FMETSAL
Sbjct:    4 GYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSAL 159          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.223e-66
Identity = 120/154 (77.92%), Postives = 142/154 (92.21%), Query Frame = 1
Query:  250 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            +PDEEYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+L+++ + VKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TF+NV RWL+ELR+H D NI++MLIGNKTDL+HL AV+TED +++AE+E L F+ETSAL
Sbjct:    4 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSAL 157          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 250.366 bits (638), Expect = 7.181e-66
Identity = 117/152 (76.97%), Postives = 140/152 (92.11%), Query Frame = 1
Query:  256 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+ +L F+ETSAL
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL 156          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11E_LOTJA9.042e-7788.61Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11D_LOTJA7.654e-7687.34Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH7.654e-7687.34Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_NICPL9.997e-7686.71Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAA1C_ARATH1.705e-7586.08Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ4.961e-7585.35Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH3.216e-7484.81Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11B_TOBAC6.706e-7281.41Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA2A_ARATH3.223e-6677.92Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11B_RAT7.181e-6676.97Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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