FC932453

Overview
NameFC932453
Unique NameFC932453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932453_ssr381 microsatellite FC932453_ssr381:381..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3121 contig Ccv1_Contig3121:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932453 vs. ExPASy Swiss-Prot
Match: PTRB_ECOLI (Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 68/175 (38.86%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  142 PVAKRVEHKMELFGDVRVDNYYWLRDDSRSDPEVLANLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIRNNEAPPSVHDTMETGPDAPPEHVILDENVKAEGRDFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYIIDIETG 666
            P A R+ H M L GD R+DNYYWLRDD+RS PEVL  L+QEN Y    M+  + ++D +  E+  RI Q +VSAP+ +  Y Y      G EY  + R+   + E      D  ET         +LD N +A   +FYS+G   ++PDN ++A AED      Y +   ++ETG
Sbjct:    3 PKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEE-----WDEWET---------LLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG 163          
BLAST of FC932453 vs. ExPASy Swiss-Prot
Match: PTRB_MORLA (Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 56/175 (32.00%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  142 PVAKRVEHKMELFGDVRVDNYYWLRDDSRSDPEVLANLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIRNNEAPPSVHDTMETGPDAPPEHVILDENVKAEGRDFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYIIDIETG 666
            P+AKR+ H  EL GDVR D+YYWL+D  R + EV+  L++EN Y+   M   ++  + ++  +  R+   ++  P + G ++YY+R  + K+Y  + R+   +                   E V+LD N  AE  D+ SV   +++ D+  +AY E+  G + YT+YI D+ TG
Sbjct:    4 PIAKRIPHPHELHGDVREDDYYWLKD--RDNTEVIQYLEEENRYYHEIMRPLQEQTEQIYESMVDRVPDSEMKVPVQHGQFFYYSRLDKNKQYPIYARKQAASRALLQDA-----------TEEVVLDLNELAEEDDYLSVTVQRMTTDHSRLAYLENRDGTDRYTIYIKDLNTG 165          
BLAST of FC932453 vs. ExPASy Swiss-Prot
Match: Y4SO_RHISN (Uncharacterized peptidase y4sO OS=Rhizobium sp. (strain NGR234) GN=NGR_a01580 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 50/185 (27.03%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  121 QSKLPSPPVAKRVEHKMELFGDVRVDNYYWLRDDSRSDPEVLANLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIRNNEAPPSVHDTMETGPDAPPEHVILDENVKAEGRDFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYIIDIETGTPV 675
            ++K   PP+ +       L  DV +D+Y WLRD  R DP+VLA L+ EN Y +   S   +++ ++ AE++ R   +    PF+ G ++Y+ ++  G  +    RR +                    PE ++ D N       FYS+G  + S D + +A++ D  G+E Y + + D+  G  +
Sbjct:    2 ENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRD--REDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPVTGG-----------------PEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMTNGREI 167          
BLAST of FC932453 vs. ExPASy Swiss-Prot
Match: Y4QF_RHISN (Uncharacterized peptidase y4qF OS=Rhizobium sp. (strain NGR234) GN=NGR_a01920 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 1
Query:  139 PPVAKRVEHKMELFGDVRVDNYYWLRDDSRSDPEVLANLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIRNNEAPPSVHDTMETGPDAPPEHVILDENVKAEGRDFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYIIDIETGTPV 675
            PP+ +       L  DV VD Y WLRD  R +P+V A L+ EN Y E A +  ++++  + AE++GR   E  + PF+ G + Y+     G  +    RR +    A                  ++LD N       FY +G F+ S D + +A++ D  G E Y + + D+  G  V
Sbjct:   39 PPLPRAEPRIRVLHDDVTVDRYGWLRD--RENPDVRAYLEAENSYAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSA-----------------ELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDV 198          
The following BLAST results are available for this feature:
BLAST of FC932453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTRB_ECOLI2.467e-2638.86Protease 2 OS=Escherichia coli (strain K12) GN=ptr... [more]
PTRB_MORLA1.267e-2232.00Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1[more]
Y4SO_RHISN2.314e-1627.03Uncharacterized peptidase y4sO OS=Rhizobium sp. (s... [more]
Y4QF_RHISN3.694e-1429.05Uncharacterized peptidase y4qF OS=Rhizobium sp. (s... [more]
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Properties
Property NameValue
Genbank descriptionC34208G05EF PostHarveN Citrus clementina cDNA clone C34208G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932453 ID=FC932453; Name=FC932453; organism=Citrus clementina; type=EST; length=704bp
GTTTTGCAAACATACGCTGCTTATAGCACAAGCGGCTGGCTTAACCTGCC
GCGAGTGATCTGCTCATCATCGTCGCTATCATCTTCAGATTCGAAAACAT
CAACGGCCACGATGATGTCGCAGTCGAAGTTACCGTCGCCGCCGGTGGCG
AAGAGGGTGGAGCACAAGATGGAGTTGTTCGGAGACGTCAGAGTTGATAA
CTATTACTGGCTTCGAGATGACTCTCGATCCGATCCCGAAGTGCTCGCTA
ATCTTAAGCAAGAAAACGACTATTTCGAGTCCGCTATGTCTGGAACAAAA
AAGATTGAGGACAACATGTTTGCTGAGTTAAAAGGAAGGATCAAGCAGGA
AGATGTATCTGCACCATTTCGTCAAGGGTCTTATTATTATTACACAAGGA
CTTTGGAGGGGAAGGAGTATGTTCAGCACTGTAGGCGATTGATCCGCAAC
AATGAGGCTCCACCTTCTGTTCATGATACCATGGAAACTGGTCCTGATGC
TCCTCCTGAGCATGTTATCTTGGATGAGAATGTTAAGGCTGAAGGTCGAG
ATTTTTATAGCGTCGGTTGTTTCCAGGTTAGCCCGGATAATAAGTTGGTG
GCATATGCAGAAGACACTAAGGGAGATGAAATATACACTGTATACATCAT
TGATATAGAGACCGGAACTCCTGTTGGGAAGCCTTTAGTGGGGGGTACTG
CATC
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