FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:781..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP4_ARATH (Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 2.180e-106
Identity = 165/203 (81.28%), Postives = 188/203 (92.61%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            KFG+PQTAVRQLE+YTTAVLLAT++PPQPPREEKWRNLMEEIS ISCQ+YRSTVYENPEFL+YF+EATPQAELG+LNIGSRPTRRKSS+GIGHLRAIPWVFAWTQTRFVLPAWLG+GAGLKGV + G+ +D KEMYKEWPFFQST++LIEMVL KAD  + K YDE LVSE R+ LG ELR+EL+TTEK+VLV+SGHEKL ++
Sbjct:  773 KFGIPQTAVRQLEVYTTAVLLATLKPPQPPREEKWRNLMEEISGISCQHYRSTVYENPEFLSYFHEATPQAELGFLNIGSRPTRRKSSSGIGHLRAIPWVFAWTQTRFVLPAWLGVGAGLKGVSEKGHADDLKEMYKEWPFFQSTLELIEMVLAKADIPMTKHYDEQLVSEKRRGLGTELRKELMTTEKYVLVISGHEKLLQD 975          

HSP 2 Score: 56.6102 bits (135), Expect = 2.180e-106
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 3
Query:  615 SLRRLIESRLPYLNPMNMLXVEILKRLRQDDDNH 716
            SL++LI+SRLPYLN MNML VEILKRLR+D+DN+
Sbjct:  978 SLKKLIDSRLPYLNAMNMLQVEILKRLRRDEDNN 1011          

HSP 3 Score: 22.3274 bits (46), Expect = 2.180e-106
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  719 LRDALLITIN 748
            LRDALLITIN
Sbjct: 1013 LRDALLITIN 1022          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP2_CHLRE (Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas reinhardtii GN=Ppc2 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.436e-67
Identity = 115/205 (56.10%), Postives = 146/205 (71.22%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKS-STGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSE-SRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            KFG+   A+ QLE YTTAVLLATMRPP PPR E+WR +ME +S++SC++YR+ V+ +P FL YF  ATP+AELG L IGSRP RR++    I  LRAIPW+FAWTQ R +LP+WLGIGA L      G+    + MY+EWPFF ST+DLIEM+L K D  IA  Y+EVLV++   ++LGAELR  L   +  +L V+GHE L  N
Sbjct:  960 KFGISGVALSQLETYTTAVLLATMRPPSPPRREEWRAVMEMLSRVSCESYRNIVHHSPLFLRYFKHATPEAELGNLYIGSRPARRRNKDASISTLRAIPWIFAWTQNRLILPSWLGIGAALTAAMTQGHLPTLQAMYREWPFFGSTVDLIEMILAKTDPRIAALYEEVLVNDPEEKKLGAELRERLQRCQGAILKVTGHENLLSN 1164          

HSP 2 Score: 41.2022 bits (95), Expect = 4.436e-67
Identity = 17/33 (51.52%), Postives = 27/33 (81.82%), Query Frame = 3
Query:  615 SLRRLIESRLPYLNPMNMLXVEILKRLRQDDDN 713
            +L +LI  R P+++P+N+L VE+L+RLRQD +N
Sbjct: 1167 TLSKLISMRSPFVDPINILQVEVLRRLRQDPNN 1199          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ERWCT (Phosphoenolpyruvate carboxylase OS=Erwinia carotovora subsp. atroseptica GN=ppc PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.454e-51
Identity = 96/200 (48.00%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP   +  L +YT A+L A + PP  P++E W  +M+E+S++SC  YR  V ENP+F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG GAGL+ V D G  E  +EM + WPFF + I ++EMV  KAD  +A+ YD+ LV E    LG +LR +L      VL +S  + L
Sbjct:  620 KYGLPDVTISSLALYTGAILEANLLPPPEPKQE-WHEVMDELSRVSCDMYRGYVRENPDFVPYFRAATPELELGKLPLGSRPAKRRPNGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQKVVDDGKQEQLEEMCRNWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVEEKLWPLGKQLRDQLAADINIVLAISNDDHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SHEON (Phosphoenolpyruvate carboxylase OS=Shewanella oneidensis GN=ppc PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.068e-51
Identity = 97/204 (47.55%), Postives = 133/204 (65.20%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENT 612
            KFGLP+ AV+ L +YT+AVL AT+ PP  P++E WRN ME I++ S   YR  V E P+F+AYF  ATP+ ELG L +GSRP +R+   GI  LRAIPW+FAW+Q R +LPAWLG G  L+  C  G     ++M +EWPFF + I ++EMV  KA+ ++A+ Y+  LVS +   LG  LR+ L    K VL ++  + L  +T
Sbjct:  619 KFGLPKLAVQSLALYTSAVLEATLLPPPEPKQE-WRNCMERIAEESVSAYRGIVREEPDFVAYFRAATPEVELGKLPLGSRPAKRRVDGGIESLRAIPWIFAWSQNRLMLPAWLGAGEALQAACQRGEIGLLQDMEREWPFFSTRISMLEMVYAKAEPNLARYYETCLVSTNLHHLGETLRQRLDLGIKVVLELTKSDTLMAHT 821          

HSP 2 Score: 30.0314 bits (66), Expect = 2.068e-51
Identity = 12/37 (32.43%), Postives = 21/37 (56.76%), Query Frame = 3
Query:  621 RRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSEMH 731
            R  ++ R PY++P+N L  E+L R R++     +  H
Sbjct:  825 RESVKLRNPYIDPLNFLQTELLARTRKETSETPASEH 861          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_MARMS (Phosphoenolpyruvate carboxylase OS=Marinomonas sp. (strain MWYL1) GN=ppc PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.068e-51
Identity = 91/203 (44.83%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            KFG+P  AVR LE+Y +AV+ A++ P +PP+EE WR +M+E++++    YRS +  + +F+ YF   TP+ EL  L +GSRP RR+S  G+  LRAIPW+FAW Q R +LPAWLG  + L+   + GN E  +EM+K+WPFF + +D+++MVL KA+  IA+ Y++ LV E  Q LG  LR +L    + V ++   E+L E+
Sbjct:  618 KFGIPDIAVRSLELYCSAVMEASLIPAEPPKEE-WRAIMDEMAEVGMNQYRSIIRGHEDFVPYFRATTPEQELAKLPLGSRPARRRSDGGVESLRAIPWIFAWMQIRLMLPAWLGAESALQQGVESGNLEKLREMHKKWPFFGAYLDMLDMVLAKAEPEIAEYYEKRLVGEELQGLGRLLRGKLKQVSELVKMLKKQERLIED 819          

HSP 2 Score: 33.8834 bits (76), Expect = 2.068e-51
Identity = 13/33 (39.39%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  615 SLRRLIESRLPYLNPMNMLXVEILKRLRQDDDN 713
            ++R+ I+ R PY++P++ L  E+L R R+D++N
Sbjct:  822 TIRQSIDVRNPYIDPLHYLQAELLYRSRKDEEN 854          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PECCP (Phosphoenolpyruvate carboxylase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ppc PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.480e-51
Identity = 95/200 (47.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  +  L +YT A+L A + PP  P++E W  +M+E+S++SC  YR  V ENP+F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG GA L+ V D G  E  +EM ++WPFF + I ++EMV  KAD  +A+ YD+ LV E    LG +LR +L      VL +S  + L
Sbjct:  620 KYGLPEVTISSLALYTGAILEANLLPPPEPKQE-WHEVMDELSRVSCDMYRGYVRENPDFVPYFRAATPELELGKLPLGSRPAKRRPNGGVESLRAIPWIFAWTQNRLMLPAWLGAGAALQKVVDDGKQEQLEEMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDEKLWPLGKQLRDQLAADINIVLAISNDDHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP1_SORBI (Phosphoenolpyruvate carboxylase 1 OS=Sorghum bicolor GN=PEPC PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.239e-51
Identity = 106/225 (47.11%), Postives = 143/225 (63.56%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ YT A L   M PP  P+ E WR LM+E++ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG GA +K +   D+ N    KEMY EWPFF+ T+DL+EMV  K D  IA  YD++LV+E  Q  G +LR+    T++ +L V+GH+ + E        LR  +S+I+ L +C
Sbjct:  671 FGEELLCFRTLQRYTAATLEHGMHPPISPKPE-WRALMDEMAVVATKEYRSIVFQEPRFVEYFRSATPETEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAIKHIMQKDIRNIHVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAAVYDKLLVAEDLQSFGEQLRKNYEETKELLLQVAGHKDVLEGDPYLKQRLRLRESYITTLNVC 894          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSYIN (Phosphoenolpyruvate carboxylase OS=Psychromonas ingrahamii (strain 37) GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.580e-51
Identity = 96/203 (47.29%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVL-VVSGHEKLSE 606
            KFGLP+ AV+ L  Y  AVL A + PP  P++E WR++M++ S  SCQ YR  V E P+F+ YF   TP+ ELG L +GSRP++RK S GI  LRAIPW+FAW+Q R +LPAWLG G  LK + + G     +EMY+ WPFF + +++ EMV  KAD  + K Y+E LV +    LG  LR  L  T + VL  +  H+ + E
Sbjct:  618 KFGLPKVAVQSLNQYAAAVLEANLLPPPAPKQE-WRDVMQQFSDQSCQEYRHFVREEPDFVPYFRSVTPEVELGKLALGSRPSKRKPSGGIESLRAIPWIFAWSQNRLMLPAWLGAGTSLKTLLNEGKKPLLQEMYQHWPFFHTRLEMFEMVFLKADEELTKFYEERLVPKELWPLGQRLRDNLTLTRETVLETIPDHQLMQE 819          

HSP 2 Score: 31.5722 bits (70), Expect = 4.580e-51
Identity = 13/31 (41.94%), Postives = 21/31 (67.74%), Query Frame = 3
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLRQDDD 710
            ++  I  R PY++P+NML  E+L R R++ D
Sbjct:  823 IKESISLRNPYVDPLNMLQAELLYRSRENGD 853          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SERP5 (Phosphoenolpyruvate carboxylase OS=Serratia proteamaculans (strain 568) GN=ppc PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.215e-51
Identity = 97/203 (47.78%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            KFGLP+  +  L +YT A+L A + PP  P++E WR LM+++S  SC+ YR  V ENPEF+ YF  ATP+ ELG L +GSRP +RK + G+  LRAIPW+FAWTQ R +LPAWLG GAGL+     G  +  + M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L +  K VL ++    L E+
Sbjct:  619 KFGLPEVTISSLALYTGAILEANLLPPPEPKKE-WRALMDDLSDTSCKMYRGYVRENPEFVPYFRAATPELELGKLPLGSRPAKRKPNGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQEAVKAGKQDQLEAMCRDWPFFSTRIAMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLASDIKVVLTIANDAHLMED 820          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PICAB (Phosphoenolpyruvate carboxylase OS=Picea abies GN=PPC PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.215e-51
Identity = 108/225 (48.00%), Postives = 142/225 (63.11%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +T A L   MRPP  P+ E WR LM+E++ ++ + YRS V+++P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG GA  K V   D+ N    ++MY EWPFF+ TIDLIEMV  K D  IA  YD++LVS+    +G +LR     T+  +L V+GH+ L E        LR  DS+I+ L +C
Sbjct:  675 FGEEHLCFRTLQRFTAATLEHGMRPPVAPKPE-WRELMDEMAVVATKEYRSIVFQDPRFVEYFRSATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVMEKDIRNLHMLQQMYNEWPFFRVTIDLIEMVFAKGDPGIAALYDKLLVSDDLWAIGEKLRANYGETKDLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVC 898          
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP4_ARATH2.180e-10681.28Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis t... [more]
CAPP2_CHLRE4.436e-6756.10Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas... [more]
CAPP_ERWCT1.454e-5148.00Phosphoenolpyruvate carboxylase OS=Erwinia carotov... [more]
CAPP_SHEON2.068e-5147.55Phosphoenolpyruvate carboxylase OS=Shewanella onei... [more]
CAPP_MARMS2.068e-5144.83Phosphoenolpyruvate carboxylase OS=Marinomonas sp.... [more]
CAPP_PECCP2.480e-5147.50Phosphoenolpyruvate carboxylase OS=Pectobacterium ... [more]
CAPP1_SORBI3.239e-5147.11Phosphoenolpyruvate carboxylase 1 OS=Sorghum bicol... [more]
CAPP_PSYIN4.580e-5147.29Phosphoenolpyruvate carboxylase OS=Psychromonas in... [more]
CAPP_SERP57.215e-5147.78Phosphoenolpyruvate carboxylase OS=Serratia protea... [more]
CAPP_PICAB7.215e-5148.00Phosphoenolpyruvate carboxylase OS=Picea abies GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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