FC932460

Overview
NameFC932460
Unique NameFC932460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:12..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.067e-89
Identity = 161/202 (79.70%), Postives = 176/202 (87.13%), Query Frame = 1
Query:   55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660
            MSSFESVVVIDG GHLLGRLAS VAKQLLNGQKIVVVRCEALNISGEFFRAKLKYH+YLRKMTR+NPTRGGPFHFRAPSRI YKA+RGM+PHKTARGAAALERLKVFEG+PPPYDKKK++VVPQALRVLRL+PGRK+CTVGRLS EVGWKY+DVVSRLEERRK K  AYYE            ++ A V+ +T   L +FGY
Sbjct:    1 MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAKVNDKTAEALKEFGY 202          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 273.863 bits (699), Expect = 6.041e-73
Identity = 141/198 (71.21%), Postives = 158/198 (79.80%), Query Frame = 1
Query:   67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660
            + VVVID   HLLGRLAST+AKQ+LNGQKIVVVR EALNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRILYKAIRGM+ HKTARG AALERLK+FEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS  VGWKY+DVV++LE++RKV+S  YY                A+ +S    QLA FGY
Sbjct:    3 QPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAAS-ESDVAKQLASFGY 198          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.890e-73
Identity = 139/202 (68.81%), Postives = 159/202 (78.71%), Query Frame = 1
Query:   55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660
            MS F+ VVVID  GHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK  R+NP+RG  FHFRAPSRI  KA+RGM+PHKTARG AALE L+  EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+VS+LEERRKVKS A+Y+            +  ++V+     +LA+FGY
Sbjct:    1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNG----KLAEFGY 197          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.758e-72
Identity = 138/202 (68.32%), Postives = 159/202 (78.71%), Query Frame = 1
Query:   55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660
            MS F+ VVVID  GHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK  R+NP+RG  FHFRAPSRI  KA+RGM+PHKTARG AALE L+  EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+V++LEERRKVKS A+Y+            ++ + V+     +L+QFGY
Sbjct:    1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEASPVNQ----KLSQFGY 197          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 8.723e-72
Identity = 142/200 (71.00%), Postives = 154/200 (77.00%), Query Frame = 1
Query:   61 SFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660
            S E VVVIDG GHL+GRLAS VAKQLLNGQKIVVVR E LNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRI YKA+RGM+ HKTARG AALERLKVFEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS  VGWKY+DVV++LE +RKV S  YY                A  +S    QLA  GY
Sbjct:    2 SVEPVVVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATA-AESDVAKQLAALGY 199          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.179e-68
Identity = 130/202 (64.36%), Postives = 154/202 (76.24%), Query Frame = 1
Query:   55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660
            MS F+ +V+ID  GHL+GRLASTVAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK  R+NP+RG  FHFRAPSRI  KA+RGM+PHKT RG  AL+ L+  EGIPPP+DK+KR+VVP ALRVLRL+P RKYCT+GRLS EVGWKY+++VS+LEERRK+KS A+Y+               A   S    +LA FGY
Sbjct:    1 MSEFQKLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINV----AKTKSSVNEKLAVFGY 197          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64
Identity = 115/167 (68.86%), Postives = 143/167 (85.63%), Query Frame = 1
Query:   64 FESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564
            FE VVV+D  GHLLGRLA+T+AK+LLNGQ++V VR E +NISG  FR KLK+HA+L+K    NP RG PFHFR+P+RIL++ IRGM+PHKT RGAAALERLK FEG+PPPYDK KR+V+PQALRVLRL+PGRK+C +GRL+ EVGW++ D+V+RLEE+RK KS A+Y
Sbjct:    2 FEKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRG-PFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFY 167          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61
Identity = 112/164 (68.29%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564
            V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AALERLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 4.061e-61
Identity = 111/164 (67.68%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564
            V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHY 168          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.061e-61
Identity = 111/164 (67.68%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564
            V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168          
The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL16_NEUCR2.067e-8979.7060S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL16B_YEAST6.041e-7371.2160S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL16A_SCHPO7.890e-7368.8160S ribosomal protein L16-A OS=Schizosaccharomyces... [more]
RL16B_SCHPO1.758e-7268.3260S ribosomal protein L16-B OS=Schizosaccharomyces... [more]
RL16A_YEAST8.723e-7271.0060S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16C_SCHPO1.179e-6864.3660S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_CYAPA1.033e-6468.8660S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN1.823e-6168.2960S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_MACFA4.061e-6167.6860S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN4.061e-6167.6860S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionC34208G12EF PostHarveN Citrus clementina cDNA clone C34208G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bp
GACACGACAACAACCGCCGACAACATCCATCCCACGGGACATTAGATCAC
CAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGGCGCAGGACACC
TCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGCTCAACGGTCAG
AAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCCGGCGAGTTCTT
CCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCA
ACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTTCCCGTATCCTC
TACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCCCGTGGTGCCGC
CGCTCTGGAGCGCCTCAAGGTCTTCGAGGGTATTCCCCCTCCCTACGACA
AGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCCTGCGTCTCCGC
CCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCACGAGGTTGGCTG
GAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAGAAAGGTCAAGA
GCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTGTCCTTGCCAAG
GCCGAGCAGGGAGCGAACGTGGACAGCCAGACCAAGACCCAGCTTGCTCA
GTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGTGTCNAGCGATG
GTTCTGG
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