FC932460
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 2.067e-89 Identity = 161/202 (79.70%), Postives = 176/202 (87.13%), Query Frame = 1 Query: 55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660 MSSFESVVVIDG GHLLGRLAS VAKQLLNGQKIVVVRCEALNISGEFFRAKLKYH+YLRKMTR+NPTRGGPFHFRAPSRI YKA+RGM+PHKTARGAAALERLKVFEG+PPPYDKKK++VVPQALRVLRL+PGRK+CTVGRLS EVGWKY+DVVSRLEERRK K AYYE ++ A V+ +T L +FGY Sbjct: 1 MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAKVNDKTAEALKEFGY 202
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3) HSP 1 Score: 273.863 bits (699), Expect = 6.041e-73 Identity = 141/198 (71.21%), Postives = 158/198 (79.80%), Query Frame = 1 Query: 67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660 + VVVID HLLGRLAST+AKQ+LNGQKIVVVR EALNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRILYKAIRGM+ HKTARG AALERLK+FEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS VGWKY+DVV++LE++RKV+S YY A+ +S QLA FGY Sbjct: 3 QPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAAS-ESDVAKQLASFGY 198
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 7.890e-73 Identity = 139/202 (68.81%), Postives = 159/202 (78.71%), Query Frame = 1 Query: 55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660 MS F+ VVVID GHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK R+NP+RG FHFRAPSRI KA+RGM+PHKTARG AALE L+ EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+VS+LEERRKVKS A+Y+ + ++V+ +LA+FGY Sbjct: 1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNG----KLAEFGY 197
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 1.758e-72 Identity = 138/202 (68.32%), Postives = 159/202 (78.71%), Query Frame = 1 Query: 55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660 MS F+ VVVID GHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK R+NP+RG FHFRAPSRI KA+RGM+PHKTARG AALE L+ EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+V++LEERRKVKS A+Y+ ++ + V+ +L+QFGY Sbjct: 1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEASPVNQ----KLSQFGY 197
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3) HSP 1 Score: 270.011 bits (689), Expect = 8.723e-72 Identity = 142/200 (71.00%), Postives = 154/200 (77.00%), Query Frame = 1 Query: 61 SFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660 S E VVVIDG GHL+GRLAS VAKQLLNGQKIVVVR E LNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRI YKA+RGM+ HKTARG AALERLKVFEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS VGWKY+DVV++LE +RKV S YY A +S QLA GY Sbjct: 2 SVEPVVVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATA-AESDVAKQLAALGY 199
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.179e-68 Identity = 130/202 (64.36%), Postives = 154/202 (76.24%), Query Frame = 1 Query: 55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSQTKTQLAQFGY 660 MS F+ +V+ID GHL+GRLASTVAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK R+NP+RG FHFRAPSRI KA+RGM+PHKT RG AL+ L+ EGIPPP+DK+KR+VVP ALRVLRL+P RKYCT+GRLS EVGWKY+++VS+LEERRK+KS A+Y+ A S +LA FGY Sbjct: 1 MSEFQKLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINV----AKTKSSVNEKLAVFGY 197
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64 Identity = 115/167 (68.86%), Postives = 143/167 (85.63%), Query Frame = 1 Query: 64 FESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564 FE VVV+D GHLLGRLA+T+AK+LLNGQ++V VR E +NISG FR KLK+HA+L+K NP RG PFHFR+P+RIL++ IRGM+PHKT RGAAALERLK FEG+PPPYDK KR+V+PQALRVLRL+PGRK+C +GRL+ EVGW++ D+V+RLEE+RK KS A+Y Sbjct: 2 FEKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRG-PFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFY 167
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3) HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61 Identity = 112/164 (68.29%), Postives = 139/164 (84.76%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564 V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AALERLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 234.572 bits (597), Expect = 4.061e-61 Identity = 111/164 (67.68%), Postives = 139/164 (84.76%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564 V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHY 168
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 234.572 bits (597), Expect = 4.061e-61 Identity = 111/164 (67.68%), Postives = 139/164 (84.76%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564 V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168 The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bpback to top |