FC932461

Overview
NameFC932461
Unique NameFC932461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932461_ssr47 microsatellite FC932461_ssr47:47..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15373 contig Ccv1_Contig15373:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.003e-93
Identity = 165/188 (87.77%), Postives = 175/188 (93.09%), Query Frame = 3
Query:  156 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            T   M FQKIKVANPIVEMDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESAEATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPG TKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T+LEVYNFTGEGGVAL+M
Sbjct:   18 TTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAM 205          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.003e-93
Identity = 166/184 (90.22%), Postives = 171/184 (92.93%), Query Frame = 3
Query:  168 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PG TKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE EVYNFTG GGVALSM
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSM 184          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.038e-92
Identity = 165/184 (89.67%), Postives = 171/184 (92.93%), Query Frame = 3
Query:  168 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PG TKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE EVYNFTG GGVALSM
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSM 184          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 5.019e-91
Identity = 161/183 (87.98%), Postives = 172/183 (93.99%), Query Frame = 3
Query:  171 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            AFQKIKVANPIVEMDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESAEATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PG TK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+TE EV+NFTGEGGV+L+M
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAM 185          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.421e-69
Identity = 126/188 (67.02%), Postives = 151/188 (80.32%), Query Frame = 3
Query:  156 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            T++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PG TKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + M
Sbjct:   35 TRRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGM 221          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.399e-69
Identity = 124/183 (67.76%), Postives = 149/183 (81.42%), Query Frame = 3
Query:  171 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PG TKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV + M
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGM 190          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 5.399e-69
Identity = 125/187 (66.84%), Postives = 150/187 (80.21%), Query Frame = 3
Query:  159 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PG TKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + M
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGM 221          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 9.210e-69
Identity = 124/187 (66.31%), Postives = 150/187 (80.21%), Query Frame = 3
Query:  159 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PG TKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + M
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGMGM 221          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 9.210e-69
Identity = 124/187 (66.31%), Postives = 151/187 (80.75%), Query Frame = 3
Query:  159 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PG TKPI IGRHA GDQY+ATD V+   G  K+VF P+      E EVYNF   GGV + M
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGMGM 221          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.571e-68
Identity = 124/187 (66.31%), Postives = 150/187 (80.21%), Query Frame = 3
Query:  159 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PG TKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + M
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGMGM 221          
The following BLAST results are available for this feature:
BLAST of FC932461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_MEDSA7.003e-9387.77Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_TOBAC7.003e-9390.22Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU2.038e-9289.67Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_SOYBN5.019e-9187.98Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MACFA1.421e-6967.02Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG5.399e-6967.76Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_HUMAN5.399e-6966.84Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE9.210e-6966.31Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN9.210e-6966.31Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT1.571e-6866.31Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34208H01EF PostHarveN Citrus clementina cDNA clone C34208H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932461 ID=FC932461; Name=FC932461; organism=Citrus clementina; type=EST; length=719bp
GGAGTCCTGGTCAAACTCGAAAGCAGAAGCATTTCAATTTTCATAGTATT
ATTATTATTATTATTGCTTCTTGCTGCTTCTTTTTGTCCACACGACCTCG
GCACCTCCGCTCTGACCCTATTATCTCTCTCTAGTTGTGAATCAACCGAA
ACTGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCAATCCC
ATCGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGAT
TAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCG
ACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAA
AGTGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTAT
TACTCCAGATGAAGCTCGTGTTAAGGAATTTGTCTTGAAACAGATGTGGA
AGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGA
GAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCCGGACAAA
GCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTG
ATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAG
GGAAAAGATGAGAAGACAGAGTTAGAGGTTTACAACTTTACGGGTGAGGG
TGGAGTTGCATTGTCCATG
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