FC932465

Overview
NameFC932465
Unique NameFC932465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15516 contig Ccv1_Contig15516:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.476e-88
Identity = 157/195 (80.51%), Postives = 174/195 (89.23%), Query Frame = 2
Query:  125 PKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            PK +R+PSIR+RV+DTLS HRNEL+SLLSRYVAQGKGILQPH LIDELDNI G+D    +L++GPF ++I SAQEAIVLPPFVAIAVRPRPGVWEYVRVNV+ELSVEQLSVSEYL FKEELV+   N+  +LELD EPFNA+FPRP RSSSIGNGVQFLNRHLSS+MFRNKDCLEPLLDFLR H YKGH LMLND
Sbjct:    5 PKFTRVPSIRDRVQDTLSAHRNELISLLSRYVAQGKGILQPHNLIDELDNILGEDHATLDLKNGPFGQIINSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVFELSVEQLSVSEYLSFKEELVEGKSNDNIILELDLEPFNASFPRPTRSSSIGNGVQFLNRHLSSNMFRNKDCLEPLLDFLRVHTYKGHALMLND 199          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.450e-67
Identity = 126/198 (63.64%), Postives = 157/198 (79.29%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA  +L+R+ S+RER+++TL+ +RNE+++LLSR  A+GKGILQ H +I E + I   +E RQ L DG F EV++S QEAIVLPP+VA+AVRPRPGVWEY+RVNV+ L VE+L  +EYLHFKEELVD + N  FVLELDFEPFNA FPRP  + SIGNGVQFLNRHLS+ +F +K+ L PLL+FLR H  KG  LMLND
Sbjct:    1 MATDRLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEI--PEENRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEELQPAEYLHFKEELVDGSSNGNFVLELDFEPFNAAFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSVKGKTLMLND 196          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.128e-67
Identity = 124/196 (63.27%), Postives = 157/196 (80.10%), Query Frame = 2
Query:  122 APKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            A KL+R+ S+RER+  T S H NEL++L SRYV QGKG+LQ H L+ E D +F  D+ +      PF +++++AQEAIVLPP+VA+A+RPRPGVW+Y+RVNV EL+VE+LSVSEYL FKE+LVD   N  FVLELDFEPFNA+FPRP+ S SIGNGVQFLNRHLSS +F++K+ L PLL+FL+AH YKG  +MLND
Sbjct:    2 AAKLTRLHSLRERLGATFSSHPNELIALFSRYVHQGKGMLQRHQLLAEFDALFDSDKEKY----APFEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGQSNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNYKGTTMMLND 193          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.538e-66
Identity = 121/198 (61.11%), Postives = 158/198 (79.80%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA   ++R+ S+RER+ DTLS H+NEL++L SR+V QG+G+LQPH L+ E + +    + R+ L+DG F +V+K+AQEAIV+PP+VA+A+RPRPGVWEYVRVNV EL+VE+L+V EYL FKEELVD +    F LELDFEPFNA+FPRP+ S SIGNGVQFLNRHLSS +F +K+ + PLL+FL+ H Y G  +MLND
Sbjct:    1 MADRAMTRVHSVRERLTDTLSAHKNELLALFSRFVKQGQGMLQPHQLLTEYEAVIPAAD-REKLKDGVFEDVLKAAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELAVEELTVPEYLQFKEELVDGSGQSNFTLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLKEHHYNGTSMMLND 197          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.035e-66
Identity = 124/198 (62.63%), Postives = 156/198 (78.79%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA  +L+R+ S+RER+++TL+ +RNE+++LLSR  A+GKGILQ H +I E + I   +E RQ L DG F EV++S QEAIVLPP+VA+AVRPRPGVWEY+RVNV+ L VE L  +E+L FKEELVD + N  FVLELDFEPF A+FPRP  + SIGNGVQFLNRHLS+ +F +K+ L PLL+FLR H YKG  LMLND
Sbjct:    1 MATERLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEI--PEENRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKTLMLND 196          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.029e-65
Identity = 122/193 (63.21%), Postives = 155/193 (80.31%), Query Frame = 2
Query:  131 LSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            LSR+ S+RER+ D+LS H NELV++ +R    GKG+LQPH +I E +N   + E R+ L+DG F +V+++AQEAIV+PP+VA+A+RPRPGVWEYVRVNV EL+VE+L V EYL FKE+LV+   N  FVLELDFEPFNA+FPRP+ S SIGNGVQFLNRHLSS +F +K+ + PLL+FLRAH YKG  +MLND
Sbjct:   10 LSRLHSVRERIGDSLSAHPNELVAVFTRLKNLGKGMLQPHQIIAEYNNAIPEAE-REKLKDGAFEDVLRAAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELAVEELRVPEYLQFKEQLVEEGPNNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLND 201          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.995e-65
Identity = 124/198 (62.63%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA  +L+R+ S+RER+++TLS +RNE+++LLSR   +GKGILQ H +I E + I   +E RQ L DG F EV++S QEAIVLPP+VA+AVRPRPGVWEY+RVNV+ L VE L  +EYL FKEELVD + N  FVLELDFEPF A+FPRP  + SIGNGVQFLNRHLS+ +F +K+ L PLL+FLR H  KG  LMLND
Sbjct:    1 MATDRLTRVHSLRERLDETLSANRNEILALLSRIEGKGKGILQHHQVIAEFEEI--PEESRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEVLQPAEYLRFKEELVDGSSNGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSVKGKTLMLND 196          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.995e-65
Identity = 123/198 (62.12%), Postives = 157/198 (79.29%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA   L+R+ S+RER+++TL  +RNE+V+LLSR + +GKGI + H LI E++ I   +  R+ L DG F EV++SAQEAIVLPP+VA+AVRPRPGVWEY+RVNV+ L VE+L V EYLHFKEELVD + N  FVLELDF+PFNA+FPRP  S SIGNGV+FLNRHLS+ +F +K+ + PLL+FLR H YKG  +MLND
Sbjct:    1 MAERVLTRVHSLRERLDETLVANRNEIVALLSRIIGKGKGICRNHQLIAEVEAI--PEATRKKLLDGAFGEVLRSAQEAIVLPPWVALAVRPRPGVWEYIRVNVHALVVEELRVPEYLHFKEELVDGSTNGNFVLELDFDPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCYKGKNMMLND 196          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.912e-65
Identity = 122/196 (62.24%), Postives = 156/196 (79.59%), Query Frame = 2
Query:  122 APKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            A KL+R+ S+RER+  T S H NEL++L SRYV QGKG+LQ H L+ E D +   D+ +      PF +++++AQEAIVLPP+VA+A+RPRPGVW+Y+RVNV EL+VE+LSVSEYL FKE+LVD   N  FVLELDFEPFNA+FPRP+ S SIGNGVQFLNRHLSS +F++K+ L PLL+FL+AH +KG  +MLND
Sbjct:    2 AAKLARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRHQLLAEFDALIEADKEKY----APFEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGHTNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNHKGTTMMLND 193          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.672e-65
Identity = 121/198 (61.11%), Postives = 155/198 (78.28%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA  +L+R+ S++ER+++TL+ +RNE+++LLSR  A+GKGILQ H +I E + I   +E RQ L DG F EV++S QEAIVLPP+VA+AVRPRPG+WEY+RVNV+ L VE L  +E+L FKEELVD + N  FVLELDFEPF A+FPRP  + SIGNGV FLNRHLS+ +F +K+ L PLL+FLR H YKG  LMLND
Sbjct:    1 MATERLTRVHSLKERLDETLTANRNEILALLSRLEAKGKGILQHHQVIAEFEEI--PEESRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGIWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFTASFPRPTLNKSIGNGVHFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKTLMLND 196          
The following BLAST results are available for this feature:
BLAST of FC932465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS2_PEA1.476e-8880.51Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUSY_SOYBN2.450e-6763.64Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUS1_MAIZE7.128e-6763.27Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS2_TULGE3.538e-6661.11Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUSY_VICFA6.035e-6662.63Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUS2_MAIZE1.029e-6563.21Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUSY_PHAAU2.995e-6562.63Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUSY_ALNGL2.995e-6562.12Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUS2_ORYSJ3.912e-6562.24Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUSY_MEDSA6.672e-6561.11Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208H05EF PostHarveN Citrus clementina cDNA clone C34208H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932465 ID=FC932465; Name=FC932465; organism=Citrus clementina; type=EST; length=750bp
GGGGTACTGCCACGACTTACACTTGTCACCTCCTTGTTTGCTTAACTTTT
TCTCTTTTTGATCATCACGGACTCTCTTTTGAAACAAGATTCGGTGATTC
ACGAGCAACAAAATCATGGCAGCCCCTAAGCTAAGTCGGATTCCGAGCAT
CAGAGAGCGCGTGGAGGACACTCTCTCTGTTCATCGTAATGAACTCGTTT
CTCTCCTCTCCAGGTATGTGGCTCAAGGCAAAGGGATTTTGCAACCGCAT
GTACTGATCGACGAGCTTGATAACATTTTTGGCGACGATGAAGGTCGGCA
GAACCTTCGGGATGGTCCGTTTAGCGAAGTTATCAAATCTGCTCAGGAAG
CGATAGTTCTGCCTCCGTTTGTGGCTATAGCAGTCCGTCCAAGACCAGGT
GTTTGGGAATATGTCCGTGTTAATGTCTATGAACTTAGCGTGGAGCAACT
AAGTGTTTCTGAATACCTTCACTTCAAAGAAGAACTTGTAGATGCGGCGT
TTAATGAAAGATTTGTGCTTGAGCTTGATTTTGAACCATTCAATGCAACT
TTTCCTCGCCCGAATCGGTCTTCATCAATTGGTAATGGGGTTCAGTTCCT
CAACCGTCACCTTTCTTCAAGTATGTTCCGCAACAAAGACTGTTTGGAGC
CCTTACTTGATTTCCTTCGAGCACACAAATATAAAGGGCATCTATTGATG
TTGAATGATCGGATTTCAAGCATTTCCCGGCTTCAGTCATCTCTGTCCAA
back to top