FC932468

Overview
NameFC932468
Unique NameFC932468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15529 contig Ccv1_Contig15529:6..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.469e-91
Identity = 156/207 (75.36%), Postives = 185/207 (89.37%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RGVVK+I+HDAGRGAPLAKV FR PYK+K+  ETFIANEG++TGQFIYAGKNA+L VGNILPL S+PEGT+++NVEE+ GDRGAL RTSGNYV VIGHNP++ KTR++LPSGAKK++ + ARG++G++AGGGR DKPLLKAGRA HK+ VKRNSWPKTRGVAMNPV
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 3.618e-90
Identity = 154/207 (74.40%), Postives = 183/207 (88.41%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RGVVK+I+HDAGRGAPLAKV FR PYK+K+  E FIANEG++TGQFIYAGK A+L VGN+LPL S+PEGT+++NVEEK GDRGAL R SGNYV +IGHNP++ KTRV+LPSGAKK+I + ARG++G++AGGGRTDKPLLKAGRA HK+ +KRNSWPKTRGVAMNPV
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 6.823e-89
Identity = 151/207 (72.95%), Postives = 182/207 (87.92%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RG+VK+I+HD+GRGAPLAKV FR PYK+++  E FIANEG++TGQFIYAGK A+L VGN+LPL S+PEGT+++NVEEK GDRGAL R SGNYV +IGHNP++ KTRV+LPSGAKKVI + ARG++G++AGGGR DKPLLKAGRA HK+ +KRNSWPKTRGVAMNPV
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 4.890e-87
Identity = 155/207 (74.88%), Postives = 178/207 (85.99%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIR QRK  G IF A+TRL K  AQ RTLDFAE HGY RGVV++IIHD GRGAPLAKV FR+PY ++   ETF+A EGMYTGQF+Y GKNAALTVGN+LP+  MPEGT+I+NVEEKAGDRGALGR+SGNYV ++GH+ + GKTRVKLPSGAKKV+ ++ARG+VGIVAGGGR DKPLLKAGRA HK+ VKRN WP+TRGVAMNPV
Sbjct:    1 MGRVIRAQRKS-GGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPV 206
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 9.876e-80
Identity = 140/207 (67.63%), Postives = 166/207 (80.19%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIR QRKG GS+F ++T+  K   + R+LD+AE HGY +GVVK+IIHD GRGAPLA V FR PYKFK   E FIA EG+YTGQF+Y GK A L VGN++P+ +MPEGT++ N+EEK GDRG L R SGN+ TVIGHNP+  +TRVKLPSGAKKV+ ++ RGMVGIVAGGGR DKP+LKAGRA HK+ VKRN WP  RGVAMNPV
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 9.876e-80
Identity = 140/207 (67.63%), Postives = 166/207 (80.19%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIR QRKG GS+F ++T+  K   + R+LD+AE HGY +GVVK+IIHD GRGAPLA V FR PYKFK   E FIA EG+YTGQF+Y GK A L VGN++P+ +MPEGT++ N+EEK GDRG L R SGN+ TVIGHNP+  +TRVKLPSGAKKV+ ++ RGMVGIVAGGGR DKP+LKAGRA HK+ VKRN WP  RGVAMNPV
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.290e-79
Identity = 142/207 (68.60%), Postives = 165/207 (79.71%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIR QRKG GS+F A+ +  K  A+ R+LDFAE  GY RGVVK+IIHD GRGAPLA V FR PY++K+  E FIA EGM+TGQF+Y G+ A L +GN++PL+ MPEGT+I N+EEK GDRG L RTSGNY TVI HN +  KTRVKLPSGAKKV+ +  R MVGIVAGGGR DKP+LKAGRA HK+ VKRNSWPK RGVAMNPV
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 8.360e-79
Identity = 137/207 (66.18%), Postives = 164/207 (79.23%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIR QRKG GS+F A+T+  K   + R LD+AE HGY +GVVK+IIHD GRGAPLA V FR PY+F++  + FIA EGMYTGQF+Y G+ A L +GN+LP+  MPEGT++ N+EEK GDRG L RTSGNY +VI HNP+  +TRVKLPSGAKKV+ +  R M+GIVAGGGR DKP+LKAGRA HK+ VKRN WPK RGVAMNPV
Sbjct:    1 MGRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.360e-79
Identity = 139/207 (67.15%), Postives = 162/207 (78.26%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIR QRKG GS+FTA+T+  K   + R LD+AE HGY +G VK+IIHD GRGAPLA V FR PYKF +  + FIA EGMYTGQF+Y GK A L +GN+LP+  MPEGT++ N+EEK GDRG L RTSGNY +VI HNP+  +TRVKLPSGAKKV+ +  R MVGIVAGGGR DKP+LKAGRA  K+ VKRN WPK RGVAMNPV
Sbjct:    1 MGRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPV 207
[Close]
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 1.092e-78
Identity = 137/207 (66.18%), Postives = 163/207 (78.74%), Query Frame = 3 
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE F+A EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  VEEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPV 207
The following BLAST results are available for this feature:
BLAST of FC932468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ASHGO1.469e-9175.3660S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_CANGA3.618e-9074.4060S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST6.823e-8972.9560S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_SCHPO4.890e-8774.8860S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_SPOFR9.876e-8067.6360S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR9.876e-8067.6360S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_DROME1.290e-7968.6060S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_ANOGA8.360e-7966.1860S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL8.360e-7967.1560S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_XENTR1.092e-7866.1860S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34208H08EF PostHarveN Citrus clementina cDNA clone C34208H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932468 ID=FC932468; Name=FC932468; organism=Citrus clementina; type=EST; length=661bp
GGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTCGTGTC
ATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAACACCCG
CCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGAGGCTC
ACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCGGCCGT
GGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTCAAGAT
GATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCAGTTCA
TCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTCCTCTC
GCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAGGCTGG
TGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGTTATTG
GCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCGGTGCC
AAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTTGCCGG
TGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAAGCACA
AGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTGCCATG
AACCCCGTCGA
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