FC932472

Overview
NameFC932472
Unique NameFC932472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15517 contig Ccv1_Contig15517:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932472 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.486e-71
Identity = 133/179 (74.30%), Postives = 157/179 (87.71%), Query Frame = 1
Query:  163 MASASDSWIKECNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNERLDLHTGLIDDLD 699
            MAS+SD W++E NEA+KL++DINGM+SER++   +GP++QR ASAIRRKITILGTRLDSLQSLL K+PGKQ +SEKEMNRRKDM+ NLRSK NQ+AS LNMSNFANRDSL G ++K  D +NR +G+DNQG+V FQRQ+MREQDEGLEKLEETV+STKHIALAVNE L L T LIDDLD
Sbjct:    1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLD 179          
BLAST of FC932472 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.049e-69
Identity = 133/179 (74.30%), Postives = 158/179 (88.27%), Query Frame = 1
Query:  163 MASASDSWIKECNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNERLDLHTGLIDDLD 699
            MAS+SDSW++  NEA+KL+++INGMISERSS   +GP++QR ASAIRRKITI G +LDSLQSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D M+R TG+DNQG+VG+QRQ+MREQDEGLE+LE TV+STKHIALAV+E LDL T LIDDLD
Sbjct:    1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLD 178          
BLAST of FC932472 vs. ExPASy Swiss-Prot
Match: STX8B_DICDI (Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 57/189 (30.16%), Postives = 97/189 (51.32%), Query Frame = 1
Query:  178 DSWIKECNEAIKLADDINGMISERSSMPASGPES-QRHASA-IRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN--MSNFANRDSLLGPEIK-SADVMNRATG----------LDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNERLDLHTGLIDDLD 699
            D W+ E +  +KL + +   I E S    + P   Q++  A +R  +  +   +  LQ  L+     + I EKE+ RRK+ + +L S  NQ+ STL+  ++N + ++ L+G          NR  G           DNQ L   Q+ IMREQDE L+ L ++++  K++A A++  LD H  ++DD++
Sbjct:    3 DYWLNEHDNIVKLINSLTADIKEYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSLT-YGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQFDNQQLFTNQQHIMREQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVE 190          
The following BLAST results are available for this feature:
BLAST of FC932472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP52_ARATH9.486e-7174.30Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
SYP51_ARATH1.049e-6974.30Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
STX8B_DICDI1.179e-1230.16Probable syntaxin-8B OS=Dictyostelium discoideum G... [more]
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Properties
Property NameValue
Genbank descriptionC34208H12EF PostHarveN Citrus clementina cDNA clone C34208H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932472 ID=FC932472; Name=FC932472; organism=Citrus clementina; type=EST; length=700bp
GGCTTGTGAAGTAAACGACGACGGGCCGTACAAAACCGGCAGTGTTGACG
CTAATTCACGTCTTTTAGCTCGTTAATGCGACTTAGCTTTGCTCCATCCT
AAACTTCTCCAATCCAATCCCTCTCTCAGTCTAGAATCCGAAATCTACCC
ATAATCTGTTCAATGGCTTCTGCTTCAGACTCGTGGATAAAGGAATGCAA
TGAAGCAATAAAACTGGCAGATGATATTAATGGCATGATATCAGAACGAA
GTTCGATGCCCGCATCTGGACCTGAATCCCAGCGTCATGCATCTGCCATA
CGGAGGAAGATTACCATATTAGGAACCAGATTGGATAGCTTGCAGTCCCT
TTTATCTAAGCTTCCCGGGAAGCAGCCCATTTCGGAGAAAGAGATGAATC
GTCGGAAGGACATGCTTGCTAATTTGAGATCCAAAGTGAATCAAATGGCT
TCCACGTTGAACATGTCAAACTTTGCTAATAGGGATAGCCTGCTTGGACC
AGAGATAAAGTCAGCCGATGTCATGAACCGAGCAACTGGCTTGGACAATC
AGGGCCTTGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGG
CTTGAGAAACTGGAGGAGACAGTAGTCAGTACAAAGCATATTGCATTGGC
AGTCAATGAAAGACTTGACCTGCACACTGGACTTATTGATGACTTGGACC
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