FC932478

Overview
NameFC932478
Unique NameFC932478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11083 contig Ccv1_Contig11083:244..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.237e-58
Identity = 114/199 (57.29%), Postives = 143/199 (71.86%), Query Frame = 1
Query:   79 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEE----QVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMSN 663
            QRS+PTPFLTKT+ LV+D +IDDVISWN+DG++F+VWNPT FA+DLLP++FKHNNFSSFVRQLNTYGFKKVVPDRWEFSND F RGE++LLREIQRRKI +                    +VSPSNSGE+    QV+                T G G    E++EEN+KLR +N QLN+++ +MK++C +I+SLMSN
Sbjct:   17 QRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVVAPSSEQRNQTM---VVSPSNSGEDNNNNQVMSSSPSSWYCH---QTKTTGNGGLSVELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSN 209          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.325e-56
Identity = 114/211 (54.03%), Postives = 139/211 (65.88%), Query Frame = 1
Query:   79 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQ---------SXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVIXXXXXXXXXXXXVTAHTCGGG-------HTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMSN 663
            QRS+PTPFLTKTYQLV+D   D++ISWN+DGTTF+VW P  FARDLLP+YFKHNNFSSFVRQLNTYGF+KVVPDRWEFSNDCF RGE+ LLR+IQRRKI          +                    IVSPSNSGEEQVI            +     GG         T  E+VEEN++LRK+N +L K++ ++K L  +I++LM+N
Sbjct:   53 QRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTVAAVPVVAHIVSPSNSGEEQVISSNSSPAAAAAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDNERLRKEMTKLKGLYANIYTLMAN 263          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.332e-54
Identity = 109/201 (54.23%), Postives = 136/201 (67.66%), Query Frame = 1
Query:   79 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIV-----SPSNSGEEQVIXXXXXXXXXXXXVTA--HTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMS 660
            QR++PTPFLTKTYQLVDD A+DDVISWN DG+TFVVW P  FARDLLP+YFKHNNFSSFVRQLNTYGF+K+VPDRWEF+NDCF RGE++LL EI RRK+ +                   P+      SP  SGEEQVI              A   +  GG    ++ +EN++LR+ENAQL +++++M+ LC +I  LMS
Sbjct:   42 QRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKV-TPPAPAATTAAVAAAIPMALPVTTTRDGSPVLSGEEQVISSSSSPEPPLVLPQAPSGSGSGGVASGDVGDENERLRRENAQLARELSQMRKLCNNILLLMS 241          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.252e-51
Identity = 106/220 (48.18%), Postives = 136/220 (61.82%), Query Frame = 1
Query:   79 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKI-----------------QSXXXXXXXXXXXXXXXXXXKPIV---SPSNSGEEQVIXXXXXXXXXXXXVTAHTC------GGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMS 660
            QRS+PTPFLTKTYQLV+D A+DDVISWN+DG+TFVVW P  FARDLLP+YFKHNNFSSFVRQLNTYGF+K+VPDRWEF+NDCF RGE++LL +I RRK+                  +                   P+    SP++S EEQV+             +          GG  +  ++ EEN++LR+ENA+L +++  MK LC +I  LMS
Sbjct:   32 QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVAAAAAAPPPPSPGMATAAAAVASGAVTVAAAPIPMALPVTRAGSPAHSSEEQVLSSNSGSGEEHRQASGSGSAPGGGGGGSASGGDMGEENERLRRENARLTRELGHMKKLCNNILLLMS 251          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.259e-42
Identity = 88/194 (45.36%), Postives = 119/194 (61.34%), Query Frame = 1
Query:   79 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMS 660
            QR+ P PFL KTYQLVDD A DDVISWN+ GTTFVVW    FA+DLLP+YFKHNNFSSFVRQLNTYGF+K+VPD+WEF+N+ F RG+++LL  I+RRK  +                      SP NSG++ +              +  T G      ++ +EN+KL+K+N  L+ ++ + K  C  + + +S
Sbjct:    3 QRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTSTPAGGKSVAAGAS-------ASPDNSGDD-IGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLS 188          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.707e-41
Identity = 91/189 (48.15%), Postives = 114/189 (60.32%), Query Frame = 1
Query:   97 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVS-PSNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMS 660
            PFLTKTY +V+D + D+ ISWN  GT FVVW P  FARDLLP++FKH+NFSSFVRQLNTYGFKKVV DRWEF+NDCF RGE+ LL  IQRRK                      PI S P++SG E  +                  G     AE+ EEN +LR+ENA+L +++A  + +C  +  L+S
Sbjct:   10 PFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGAGAAPAGGIPTAI---PISSPPTSSGGEPAV-----SSSPPRGAAGIAAGVSGAVAELEEENARLRRENARLARELARARRVCDGVRRLVS 190          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.373e-39
Identity = 88/202 (43.56%), Postives = 108/202 (53.47%), Query Frame = 1
Query:   82 RSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQS--------XXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMSN 663
            +++P PFLTKTYQLVDD A D V+SW  D TTFVVW P  FARDLLP YFKHNNFSSFVRQLNTYGF+K+VPDRWEF+N+ F RGE+ LL EI RRK                              P+  P  +  E+              V             + E+N++LR+ N  L  ++A MK L   I   + N
Sbjct:   29 KAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRPRVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQN 230          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.754e-39
Identity = 83/183 (45.36%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   79 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMK 627
            QRS+P PFL+KTYQLVDD + DDV+SWN++GT FVVW    FA+DLLP+YFKHNNFSSF+RQLNTYGF+K VPD+WEF+ND F RG + LL +I+RRK                      P  S S  G++                + +     +  A++  EN+KL++EN  L+ ++A  K
Sbjct:    8 QRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRK-------SVIASTAGKCVVVGSPSESNSGGGDDH-----GSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAK 178          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 85/195 (43.59%), Postives = 106/195 (54.36%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQV----IXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMSN 663
            P PFL+KTYQLVDD + DDV+SW +D  TFVVW P  FARDLLP YFKHNNFSSFVRQLNTYGF+K+V DRWEF+N+ F +G + LL EI RRK  S                       P+      V                    +  GGG   A + E+N +LR+ N+ L  ++A M+ L   I   + N
Sbjct:   34 PAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQN 228          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.186e-38
Identity = 85/195 (43.59%), Postives = 107/195 (54.87%), Query Frame = 1
Query:   82 RSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK-IQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMSN 663
            + +P PFLTKTYQLVDD   D ++SW +D TTFVVW P  FARDLLP YFKHNNFSSFVRQLNTYGF+K+V DRWEF+N+ F +G + LL EI RRK  Q                     +  P  +     +            V      GG   A + E+N +LR+ N+ L  ++A MK L   I   + N
Sbjct:   29 KPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQN 223          
The following BLAST results are available for this feature:
BLAST of FC932478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFB2A_ARATH4.237e-5857.29Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB2B_ARATH2.325e-5654.03Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2B_ORYSJ6.332e-5454.23Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2C_ORYSJ2.252e-5148.18Heat stress transcription factor B-2c OS=Oryza sat... [more]
HSF24_SOLPE3.259e-4245.36Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB2A_ORYSJ4.707e-4148.15Heat stress transcription factor B-2a OS=Oryza sat... [more]
HSFB4_ARATH3.373e-3943.56Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HSFB1_ARATH5.754e-3945.36Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB4D_ORYSJ1.674e-3843.59Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB4B_ORYSJ2.186e-3843.59Heat stress transcription factor B-4b OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34209A08EF PostHarveN Citrus clementina cDNA clone C34209A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932478 ID=FC932478; Name=FC932478; organism=Citrus clementina; type=EST; length=710bp
CATATGACTCCGCCTCCGACGGCAATGGAGCAGAACGGAGACTCTACACC
GTCGCCGACGACTACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGT
TTTTGACGAAAACTTATCAGTTAGTTGACGATCAGGCGATTGACGACGTT
ATTTCGTGGAACAAAGACGGAACTACGTTCGTCGTCTGGAATCCTACCAT
TTTCGCTAGAGATTTGCTTCCTAGATACTTCAAACACAACAATTTTTCTA
GCTTCGTTCGTCAACTCAACACTTATGGGTTTAAAAAAGTTGTACCCGAT
CGGTGGGAGTTTTCTAACGACTGCTTCCACCGTGGCGAGCAACAGCTTCT
GCGTGAAATTCAGCGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTG
TCACCGTTGCGGTGCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCG
CCGTCGAATTCGGGGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGC
AGCGGGAGCGGCCGGTGTAACCGCTCACACGTGTGGAGGTGGTCACACGT
GTGCGGAGATAGTTGAAGAGAACGATAAATTGAGGAAGGAGAATGCTCAG
CTGAACAAGCAGGTGGCGGAAATGAAGAATCTCTGTAAACATATATTTAG
TTTGATGTCTAATTCACCCGTGGTGGTGNTTGGTGGTGGTGACGGCGGCG
GTCAGGCGGC
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