FC932479

Overview
NameFC932479
Unique NameFC932479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932479 vs. ExPASy Swiss-Prot
Match: Y3333_ARATH (Probable inactive protein kinase At3g63330 OS=Arabidopsis thaliana GN=At3g63330 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.715e-78
Identity = 139/197 (70.56%), Postives = 167/197 (84.77%), Query Frame = 1
Query:   13 NEQTSRRIIDFGSAIDDFTVKHLYGSTGPSKAEQTSEYTPPEAFLNAAWYQGPIGTTLKYDMWSVGVVILEMILGSPNVFQISDLTRALLDHHLEGWNDSLKELAFRLRSYMELCILIPGGSSKLKH---TSNQGGLSPASWKCSEEFFSLKIKGRDPLKQGFPNVWALRLVRQLLLWDAEDRLSVDVALRHPYFQP 594
            N +T+ RIIDFGSA+D++T+KHLYGSTGPS+AEQT +Y PPEA LN++W+ GP   TLKYDMWSVGVV+LEMILGSPNVF+IS +TRALLD H+ GW+++ KELA++LRS ME+CILIPG  S LKH   +S QGG+S ASWKCSEEFF+ +IK RDPLK GFPNVWALRLVR LL W  EDR++VD AL+HPYFQP
Sbjct:  178 NFKTNMRIIDFGSALDEYTIKHLYGSTGPSRAEQTHDYAPPEAILNSSWHHGPTSLTLKYDMWSVGVVMLEMILGSPNVFEISSVTRALLDQHIRGWSENFKELAYKLRSLMEMCILIPG--SSLKHGGASSKQGGISLASWKCSEEFFAEQIKSRDPLKIGFPNVWALRLVRGLLQWYPEDRVTVDEALQHPYFQP 372          
The following BLAST results are available for this feature:
BLAST of FC932479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3333_ARATH1.715e-7870.56Probable inactive protein kinase At3g63330 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34209A09EF PostHarveN Citrus clementina cDNA clone C34209A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932479 ID=FC932479; Name=FC932479; organism=Citrus clementina; type=EST; length=726bp
GGGTTATGGCATAATGAGCAGACCTCAAGGCGCATTATTGACTTTGGCAG
CGCAATAGATGACTTCACAGTGAAGCATTTATATGGATCAACTGGACCTT
CTAAAGCTGAACAAACTTCTGAATATACCCCTCCTGAAGCTTTTCTTAAT
GCTGCTTGGTATCAAGGGCCAATAGGCACAACTTTGAAGTATGATATGTG
GAGTGTTGGTGTTGTGATCTTAGAGATGATTTTAGGATCACCGAATGTTT
TTCAGATAAGTGATTTAACGCGTGCTCTTTTAGATCACCATCTTGAGGGT
TGGAATGATAGCTTAAAAGAGCTTGCTTTTAGACTTAGGTCTTACATGGA
ATTATGTATCTTAATTCCTGGGGGTTCCTCAAAGCTTAAGCATACTTCAA
ACCAAGGTGGACTCTCCCCTGCTTCATGGAAATGCTCTGAAGAGTTTTTT
TCACTAAAAATAAAGGGTAGAGATCCACTTAAACAAGGGTTTCCAAATGT
TTGGGCATTGCGGTTAGTGCGCCAATTATTGCTTTGGGATGCAGAGGATC
GATTGAGTGTTGACGTTGCTCTGCGGCATCCTTATTTCCAACCTTCCAAA
AGATGAGTTGGTGAGAGGTATACGAGTTTCTTTCACTTTTTTCCCCCGTC
CCACTAAAGGTATGATGGCGGGCAAAATAGAGAGTAAAATCCACAAGTCA
AGTATAGGCATGCCACTAAGTCAAGC
back to top