FC932490

Overview
NameFC932490
Unique NameFC932490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15521 contig Ccv1_Contig15521:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC932490 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.462e-58
Identity = 120/207 (57.97%), Postives = 143/207 (69.08%), Query Frame = 2 
Query:  116 KVKITSKTHVKPSK-VIGRRECQLVTFDLPYLFFYYNQKLLLYRNG---DREF----HDAVEKLKDGLKHVLEEFYQLAGKLGKDEEGVFRVEYXXXXXXXXXXXXXXXXXXXXX---LTAEEGTKSFKELIPYYGVLNLEGTHRPLLALQLTKLKDGMVIGCAFNHAILDGTSTWHFMSSWAQACNGATSVSVPPFLERTNPAHAR 703
            K+KI SKTHVKP+K V+G+++  L TFDLPYL FYYNQK LLY+     D E     ++ VE LKDGL  VLE+FYQLAGKL KD+EGVFRVEY                        LTAE+GT  FKEL+PY G+LNLEG  RPLLA+Q+TKLKDG+ +G AFNHA+LDGTSTWHFMSSWA+ C GA S+S  PFL+R+     R
Sbjct:    2 KIKIMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQNEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAEDGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTR 208
The following BLAST results are available for this feature:
BLAST of FC932490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DCR_ARATH1.462e-5857.97BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC34209B08EF PostHarveN Citrus clementina cDNA clone C34209B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932490 ID=FC932490; Name=FC932490; organism=Citrus clementina; type=EST; length=715bp
AGGAAGCAGAAGTGCTCCTGAACATATCATCTCTTCTATTAGTTCATCCA
ACAAAAACAAATCAAAAGTGCTTTTGACAATCAGGACCCTAATATTAGAA
ATGGCAGAGATAACAAAGGTGAAGATTACAAGCAAAACCCATGTGAAGCC
GAGCAAAGTGATAGGAAGAAGAGAGTGTCAGCTGGTGACTTTTGATCTGC
CGTATCTGTTTTTTTATTACAACCAGAAGCTGTTGTTGTATAGAAACGGG
GACCGTGAGTTTCACGACGCTGTCGAGAAACTCAAAGATGGGCTTAAGCA
TGTGTTGGAGGAGTTTTATCAGCTGGCTGGGAAGCTGGGGAAAGATGAAG
AAGGTGTCTTTAGGGTTGAGTATGATGATGACATGGACGGCGTCGAGGTG
GCCGAGGCCGTCGCTGATGAGATCGCCGTCGATGATCTGACGGCTGAGGA
AGGCACCAAGAGTTTCAAGGAGTTGATTCCCTATTATGGAGTCCTGAATT
TGGAGGGGACTCATCGGCCTTTGTTGGCTCTTCAGTTGACCAAGCTGAAA
GACGGAATGGTAATTGGATGCGCGTTCAATCACGCGATCCTAGACGGCAC
CTCCACGTGGCACTTCATGAGCTCATGGGCCCAGGCGTGCAACGGGGCCA
CCTCGGTCTCGGTCCCACCTTTCCTGGAGCGCACAAATCCCGCACACGCG
CGTGAAGCTCGACCC
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