FC932491

Overview
NameFC932491
Unique NameFC932491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932491 vs. ExPASy Swiss-Prot
Match: Y3846_ARATH (Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 4.253e-91
Identity = 155/215 (72.09%), Postives = 184/215 (85.58%), Query Frame = 2
Query:   41 MGPNIVSEAGLSTRVNQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFTSL 685
            M PNIV+EAG+ TRV QWW +IPF TS+VV+VCG IYLICLL GYD+FYE+CFLPSA+ISRFQVYRFYT+I+FHGSLLHVLFNM+ALVP+GSELERIMGSVR+ Y+T+LLAT+N              PFY+  ++M+ECAIGFSG++FS+IVIETSLSG  SRSVFGLFN+PAK YP ILL++FQ+LMTNVSLLGHLCGILSGF+Y+YG F  L
Sbjct:    1 MRPNIVTEAGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFL 215          

HSP 2 Score: 26.5646 bits (57), Expect = 4.253e-91
Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  670 LFHLLMPGTSFYSAIE 717
            LF+ LMPG+SF++ IE
Sbjct:  211 LFNFLMPGSSFFTTIE 226          
BLAST of FC932491 vs. ExPASy Swiss-Prot
Match: Y3761_ARATH (Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 49/159 (30.82%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  188 EICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITI-LLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAY 661
            E+ F P  +     + R + S  +H +  H+++NM++L+  G +LE  MGS     +   L+  S                + R     +E A+GFSGV+F++ V+  S +   S SV+G+  +P K+     L+L Q+ + N S LGHL GIL+G  Y
Sbjct:   62 EVWFNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAY--YNEYAVGFSGVLFAMKVVLNSQAEDYS-SVYGIL-VPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIY 216          
BLAST of FC932491 vs. ExPASy Swiss-Prot
Match: RBD2_SCHPO (Rhomboid protein 2 OS=Schizosaccharomyces pombe GN=rbd2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 42/184 (22.83%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  104 IPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGF 655
            +P +T  +  +   +Y +           + ++   ++ + Q+Y   T +  H S+LH++FN ++L+P  S+ E+  G++    +T++  T                 F+  ++ +     G SG  F+ I      S  +  S F LF+IPA  +P+I L++  +L+   S +GH  G + G+
Sbjct:   13 LPIWTQIITYIAILVYALSFFGISTGVLSLSWI--GLLQKRQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYT-----LFPGIMHLIVYHFFLRKDYVS--IAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILVPKASFIGHASGAVMGY 187          
The following BLAST results are available for this feature:
BLAST of FC932491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3846_ARATH4.253e-9172.09Uncharacterized protein At3g58460 OS=Arabidopsis t... [more]
Y3761_ARATH1.765e-1130.82Uncharacterized protein At3g17611 OS=Arabidopsis t... [more]
RBD2_SCHPO6.708e-1122.83Rhomboid protein 2 OS=Schizosaccharomyces pombe GN... [more]
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Properties
Property NameValue
Genbank descriptionC34209B09EF PostHarveN Citrus clementina cDNA clone C34209B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932491 ID=FC932491; Name=FC932491; organism=Citrus clementina; type=EST; length=719bp
GGGAAAAAGTCACCGAGAAGCTTACTTCTTGACGTGCAAAATGGGACCCA
ACATTGTTTCGGAGGCGGGGTTGTCCACCAGAGTGAATCAGTGGTGGGAA
AGTATTCCATTCTTTACGTCTGCTGTGGTGATTGTTTGTGGGACAATTTA
CTTGATCTGCCTCTTGTTTGGATATGATTCCTTTTATGAAATATGTTTCC
TCCCATCTGCAGTTATATCACGGTTTCAAGTTTACAGGTTTTATACCTCC
ATTGTTTTTCATGGTTCACTGCTACACGTTCTATTCAACATGTTGGCTTT
GGTTCCTTTGGGTTCTGAACTGGAGCGAATTATGGGATCTGTCCGCATGT
TTTACATTACTATTTTGTTGGCCACAAGCAATGCTATTTTACATCTTCTA
ATTGCTTTGTTGGTAGCCCATATTCCATTTTATCGGTTACAGAACGTCAT
GGATGAGTGTGCAATCGGCTTCTCAGGAGTTATTTTCTCTTTGATCGTCA
TAGAGACAAGTTTGAGTGGAGCCCAATCTAGGAGTGTGTTTGGTCTCTTC
AACATCCCTGCTAAGTGGTATCCATTGATCTTATTAGTACTGTTCCAGGT
TCTTATGACCAACGTCTCGTTACTTGGACACCTATGTGGCATTTTGTCTG
GATTTGCATATACCTATGGCTTTTTCACCTCCTTATGCCTGGAACATCCT
TCTATTCTGCCATTGAGTC
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