FC932493

Overview
NameFC932493
Unique NameFC932493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932493_ssr55 microsatellite FC932493_ssr55:55..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15522 contig Ccv1_Contig15522:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932493 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 2
Query:  239 IVGLDVEWRPSFSR-QQNPVATLQLCVG-RRCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEGLEI-EGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAND 700
            ++G D+EW P +++ +   VA +Q+CV  ++C +F I      P+ L   L DE    VGVGI+GD  KL ++Y L++   ++L  +A + L   E   F GL      + ++++ K ++   S WD  +LT  Q LYA  DA+    I + L   D
Sbjct:   72 VLGFDIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKLRCKEKWTFNGLIK---HLFKEQLYKRKSYRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKLEGMD 225          
BLAST of FC932493 vs. ExPASy Swiss-Prot
Match: WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 52/156 (33.33%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  239 IVGLDVEWRPSFSRQQ-NPVATLQLCVGR-RCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEGLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAND 700
            +VG D+EW P ++R +   VA +QLCV   +C +F +      PQ L   L ++     GVGI+GD  KL  ++ +++   V+L  +A + L+        L +L   +L K++ K ++I  S W    LT  Q LYA  DA+  F I R L   D
Sbjct:   78 VVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKC--TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNLEILD 231          
BLAST of FC932493 vs. ExPASy Swiss-Prot
Match: WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  239 IVGLDVEWRPSFSR-QQNPVATLQLCVGR-RCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEGLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAF 661
            +VG D+EW P +   +++ VA +QLCV   +C +F I      PQ L   L ++     GVGI+GD  KL  ++ +++   V+L  +A E L+        L  L   VL K++ K ++I  S W    LT  Q LYA  DA+
Sbjct:   72 VVGFDMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC--AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAY 212          
The following BLAST results are available for this feature:
BLAST of FC932493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRN_XENLA3.664e-1432.48Werner syndrome ATP-dependent helicase homolog OS=... [more]
WRN_HUMAN2.375e-1333.33Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
WRN_MOUSE1.539e-1234.27Werner syndrome ATP-dependent helicase homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34209B11EF PostHarveN Citrus clementina cDNA clone C34209B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932493 ID=FC932493; Name=FC932493; organism=Citrus clementina; type=EST; length=702bp
GACAGAAAACGAAAACCTTAAGCGAGAAGAAAAACCAAAAAAAGAAAAAA
AAGAAAAAGAAAAGAAAAGAATGGCAATAAGCATAAGCAAACACGAAGTT
CAGTACAACACCCACGACGAATACACCGTACACTTCTACGACGACGTCGT
CTTCACTCAAGTAACCCGATCGCCTTCCGTGGTGGACGACTGGATCTCGG
AGATCGAGCGCATCCACCGCCGTCGCCTCCACTGCCTGATTGTGGGACTC
GACGTGGAGTGGCGCCCAAGCTTCAGCCGGCAACAAAACCCCGTCGCCAC
GCTCCAACTCTGCGTCGGCCGCCGCTGCCTGATCTTCCAAATCATCCACG
CCCGAAGAATCCCCCAATCACTCGCAAACTTTTTGTCCGACGAGGATTAT
ACGTTCGTGGGTGTGGGGATCGACGGAGATGTGAAGAAGCTGGAGAACAA
TTACGGGCTGCAGGTTTTTAGGACGGTGGATTTGAGGCCACTGGCGGCGG
AGGGTCTCGAGATTGAGGGGCTGAGGTTCGCGGGTCTGAAGGCGCTGTCG
TGGGAGGTCTTGGAAAAGGAAGTGAACAAGCCGAGGAACATTACCCTCAG
TGCTTGGGATACTCGTGTTCTTACTCCCGCTCAGGTTCTTTACGCTTGCC
TCGATGCGTTTATTGCTTTTGAGATAGGCAGGGTTCTTAATGCTAATGAC
GT
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