FC932498

Overview
NameFC932498
Unique NameFC932498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14536 contig Ccv1_Contig14536:35..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932498 vs. ExPASy Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 3.576e-81
Identity = 157/239 (65.69%), Postives = 186/239 (77.82%), Query Frame = 1
Query:    7 MATISVPLSHNTSSLQHLSTIRHRFHFPRSSHSPLTVACSA---RRNSSEPKESFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLCTNTTLSPDGRAELG 714
            MA++ V  + N  S    S      +  R   S +TV CSA   R N    K+S   LKEL  +AC  L A  +T ASPVIAANQRLPPLSTEPDRCE+AFVGNTIGQANGVYDKP+DLRFCDYTN+++NLKGK+L+AALM  AKFDGADM+EVVMSKAYAV ASFKGV+F+NAV+DRVNFGK++L+GAVF+NTVLSGSTF EA L+D VFEDTIIGYIDLQK+C N +++ +GR  LG
Sbjct:    1 MASLPVQFTRNQISSPFFSV-----NLRREPRSLVTVHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEGRLVLG 234          
BLAST of FC932498 vs. ExPASy Swiss-Prot
Match: TL225_ARATH (Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 67/245 (27.35%), Postives = 108/245 (44.08%), Query Frame = 1
Query:   19 SVPLSHNTSSLQHLSTIRHRFHFPR--------SSHSPLTVACSARRNSSEPKESFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLC-----TNTTLSPDGRAELG 714
            S+ +S ++SS+      R  +HF R        SS S L +  S+  N+ E   S +     K +    +AA  + ++S V        P   E +R E    G   G  +       DL    ++NE  N +  +  +A M ++ F G+  +   + KA A  A+F G D S+ ++DR+   +A+L  AV   +VL+ S    A+++ A F D +I  +  Q LC     TN     D R  LG
Sbjct:   13 SLDISRSSSSVS-----RSPYHFQRYLLRRLQLSSRSNLEIKDSS--NTREGCCSSAESNTWKRILSAAMAAAVIASSSGV--------PAMAELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNE--NFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLG 239          
The following BLAST results are available for this feature:
BLAST of FC932498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TL17_ARATH3.576e-8165.69Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
TL225_ARATH6.655e-1127.35Thylakoid lumenal protein At1g12250, chloroplastic... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34209C05EF PostHarveN Citrus clementina cDNA clone C34209C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932498 ID=FC932498; Name=FC932498; organism=Citrus clementina; type=EST; length=716bp
CAACAGATGGCTACCATTTCAGTTCCCCTCTCTCATAACACTTCATCTCT
TCAACATTTATCCACTATACGCCACCGTTTTCACTTTCCCAGATCGTCCC
ATTCACCCCTCACAGTCGCTTGCTCTGCTAGAAGAAATTCCTCAGAACCA
AAGGAAAGCTTTTCTCATTTAAAGGAACTCAAGGGCGTAGCTTGTGGCTT
TCTTGCTGCTTGGGCTGTAACGGCTGCCTCACCCGTCATTGCTGCTAATC
AGAGGCTGCCCCCGCTTTCAACAGAGCCTGATCGATGTGAGCGTGCATTT
GTTGGAAACACGATTGGTCAAGCAAATGGCGTTTACGACAAGCCAATTGA
TCTGCGCTTCTGTGATTACACTAATGAAAAATCCAACCTCAAGGGGAAGT
CTCTTGCGGCAGCACTCATGTCTGATGCAAAGTTTGATGGTGCGGATATG
TCAGAAGTGGTTATGTCAAAGGCTTACGCTGTGGGAGCAAGCTTCAAGGG
TGTAGACTTCTCGAATGCTGTTTTAGACCGGGTAAATTTTGGGAAAGCAC
ATCTTGAAGGAGCTGTTTTCAAGAATACTGTATTATCTGGCTCCACTTTT
AATGAAGCTCAACTACAAGATGCAGTTTTTGAGGACACAATTATAGGCTA
CATTGATCTCCAGAAGCTGTGTACAAATACAACTCTCAGTCCTGATGGAA
GAGCTGAATTGGGATG
back to top