FC932500

Overview
NameFC932500
Unique NameFC932500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14328 contig Ccv1_Contig14328:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 71/99 (71.72%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRR
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR 451
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 71/99 (71.72%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRR
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR 451
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 71/99 (71.72%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRR
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR 451
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:  424 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKIL-KEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +G+C+PLA + IGT +HNIE NPGQG KL RAAGT A+I+ K   +  C+VRLPSG +KLID+RCRATIG VSN +HG +K  KAGQSRWLGRR
Sbjct:  359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRR 452
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 49/98 (50.00%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            DI+ +IG+ +PL  + IGT+IHNIE+NPG+GGK+VR+AG+SA+++ +  + FC+++LPSG  +L      ATIG +SN  +   K+ KAG+SRW+GRR
Sbjct:  121 DIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKDENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRSRWMGRR 218
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACHK (50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKR 217
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACCZ (50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKR 217
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACC7 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKR 217
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACC3 (50S ribosomal protein L2 OS=Bacillus cereus (strain 03BB102) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKR 217
[Close]
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACC1 (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 10987) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKR 217
The following BLAST results are available for this feature:
BLAST of FC932500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM02_ORYSJ1.118e-3471.7260S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI1.118e-3471.7260S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA1.118e-3471.7260S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO2.668e-2865.9660S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RM02_RECAM1.282e-2250.0060S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_BACHK2.187e-2248.5750S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACCZ2.187e-2248.5750S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC72.187e-2248.5750S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC32.187e-2248.5750S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC12.187e-2248.5750S ribosomal protein L2 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34209C07EF PostHarveN Citrus clementina cDNA clone C34209C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932500 ID=FC932500; Name=FC932500; organism=Citrus clementina; type=EST; length=712bp
GATCTCTCTACTCCCTACTCACTCAGAAAAACTCTCACGGTGGCTGTCAC
CTTTCTGCTCAGTGTATTCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTAGGGTGCTTTAGCTTCTGTCACCGCCGGTAACATGTTGTGAT
AGACAGTGAAATCAGCAGAAGAAAACAAAACGGAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTTCGTTCTCAACAACAACACTGCT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAACTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCA
TGGAGCTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAA
GACTGTGGNTAG
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