FC932501

Overview
NameFC932501
Unique NameFC932501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10510 contig Ccv1_Contig10510:38..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932501 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.789e-49
Identity = 102/170 (60.00%), Postives = 117/170 (68.82%), Query Frame = 1
Query:  157 STDDIVDTTPFLXXXXXXXXXXXXXXXXX---IRRQGLREAARFLRHASSRRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAIQCVLHMVCVCVEYKXXXXXXVSAFGGAEEGNLNSGNTRGDSGEYVSLA 657
            ++D I+DTTPFL                     RRQGLREAARFLRHA SRR MREPSM+VRETAAEQLEERQSDWAYSKPVV LDI+WNLAFVA+  +V++LSR+E+PNMPL +W+VGY IQC LHM CVCVEY+          GG       SG T   S +YVSLA
Sbjct:   28 NSDGIIDTTPFLPPTVTRTISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGG------GSGLTNSSSQQYVSLA 191          

HSP 2 Score: 22.7126 bits (47), Expect = 3.789e-49
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 3
Query:  660 QLEEEG--TSVAKHLESATQCF 719
            QLE+ G  ++ AKHLESA   F
Sbjct:  192 QLEDRGETSNPAKHLESANTMF 213          
BLAST of FC932501 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.819e-45
Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 1
Query:  127 ATAMSTSTNQSTDDIVDTTPFLXXXXXXXXXXXXXXXXX--IRRQGLREAARFLRHASSRRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAIQCVLHMVCVCVEYK 555
            ++ +  S++ S+ D +D  P L                   +RRQGLREAARFL  ASS R MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV+VA +++V+SR E P MPL +W++GYA+QCVLHMVCVCVEY+
Sbjct:   10 SSLIPASSSSSSSDAIDPAPLLFNGDDNEGNNGGGGGERRSVRRQGLREAARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYR 154          

HSP 2 Score: 27.7202 bits (60), Expect = 1.819e-45
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  627 RRFGGVCFFS-NQLEEEGTSVAKHLESATQCF 719
            RR  GV   S   L+ E +SVAKHLESA   F
Sbjct:  192 RRNSGVQDLSLGHLDTESSSVAKHLESANTMF 223          
BLAST of FC932501 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 9.666e-44
Identity = 86/141 (60.99%), Postives = 104/141 (73.76%), Query Frame = 1
Query:  244 IRRQGLREAARFLRHASS-RRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAIQCVLHMVCVCVEYKXXXXXXVSAFGGAEEGNLNSGNTRGDSGEYVSLAIN 663
            +RRQGLREAAR LRHASS R  MREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WNLAFV VA +V+VLS +E PNMPL +WI+GY +QC++HMVCVCVEY+                + +S ++  D  E + L+ N
Sbjct:   24 VRRQGLREAARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRN 164          

HSP 2 Score: 26.1794 bits (56), Expect = 9.666e-44
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  660 QLEEEGTSVAKHLESA 707
            QLE E  S AKHLESA
Sbjct:  174 QLENENNSFAKHLESA 189          
The following BLAST results are available for this feature:
BLAST of FC932501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RING4_ARATH3.789e-4960.00E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
RING1_ARATH1.819e-4560.00E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
RING2_ARATH9.666e-4460.99E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34209C08EF PostHarveN Citrus clementina cDNA clone C34209C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932501 ID=FC932501; Name=FC932501; organism=Citrus clementina; type=EST; length=725bp
GCCCAAGCCCTAATACAATCAAATCAATCAGTAAAAAATTTCAGCCTAAT
TCCATACCATACCAATTGCTCCCAATTTTAAATTTAAATTTACCAAAAAT
TCCAAAATTCCAAAATTCCTGAAATTGCTACCGCAATGTCTACATCGACA
AACCAATCCACGGACGACATCGTCGACACGACGCCGTTTCTATCCTCTAA
CAGCTCCCACGACGACAGCACTCACAGTCAGAGCCGCCGATCCATCAGGA
GACAGGGCCTCCGCGAGGCTGCCCGATTCCTTCGGCACGCCAGCAGCCGT
CGCACGATGCGGGAGCCGTCGATGATGGTGCGGGAAACGGCGGCGGAGCA
GTTAGAGGAGCGCCAGAGCGACTGGGCGTATTCGAAGCCCGTGGTGGTTC
TCGACATTATCTGGAATCTGGCTTTCGTGGCGGTGGCCTTCTCGGTTATG
GTATTGAGCCGAAATGAGCGGCCTAATATGCCGCTCGGGCTGTGGATTGT
TGGGTACGCTATACAATGCGTTTTGCATATGGTTTGTGTGTGCGTTGAGT
ATAAACGGAGGAGGAGACGGAGAGTTTCGGCGTTTGGTGGGGCCGAGGAA
GGGAATTTGAATTCGGGGAACACCAGAGGCGATTCGGGGGAGTATGTTTC
TTTAGCAATCAATTGGAGGAAGAAGGGACGAGTGTTGCAAAACATCTGGA
GTCTGCAACACAATGTTTCATTCAT
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