FC932502

Overview
NameFC932502
Unique NameFC932502
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15085 contig Ccv1_Contig15085:8..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 3.109e-85
Identity = 144/197 (73.10%), Postives = 170/197 (86.29%), Query Frame = 2
Query:   95 MATDT-VVAEHRSSNNGH-GCCAKG-PGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSEFNVKGRWENP 676
            MAT+T VVA    SN G  GCC  G PGYATPL AMSGP EKL+YVT +YTGTG +KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLPSL+SGRIY +DT++NPRAPSL+K V+P +I  KTGL++PHTAHCLA+G+ILVSCLGD++GNA+GNGFLLLDS+FN+K RWE P
Sbjct:    1 MATETEVVAPVTVSNGGSKGCCKYGGPGYATPLAAMSGPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYVDPKEIADKTGLAFPHTAHCLATGEILVSCLGDEEGNAKGNGFLLLDSDFNIKNRWEKP 197          

HSP 2 Score: 30.8018 bits (68), Expect = 3.109e-85
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  670 KPSHSPAFRYDFWY 711
            KP HSP + YDFWY
Sbjct:  196 KPGHSPLYGYDFWY 209          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.320e-62
Identity = 110/177 (62.15%), Postives = 135/177 (76.27%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWENP 676
            C   GPGYATPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LPS++S RIYVVD    PRAP LHKV+EP +I  K  L   HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE P
Sbjct:    5 CTKCGPGYATPLEAMKGPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVVDVGSEPRAPKLHKVIEPNEIHAKCNLGNLHTSHCLASGEVMISSLGDPQGNGKG-GFVLLDGETFEVKGTWEKP 180          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.030e-62
Identity = 111/177 (62.71%), Postives = 135/177 (76.27%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWENP 676
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRAP LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE P
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDGETFEVKGTWERP 180          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.030e-62
Identity = 110/175 (62.86%), Postives = 134/175 (76.57%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 670
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++  K GL+ PHT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVVDVGSDPRAPRIHKTVEPYEVFWKCGLANPHTSHCLGCGEIMISSLGDPCGNGKG-GFVLLDGETFEVKGNWE 177          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.958e-62
Identity = 112/177 (63.28%), Postives = 136/177 (76.84%), Query Frame = 2
Query:  152 CAK-GPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWENP 676
            C K GPGY +PL+AM GPRE+L+Y+ C+Y  TG E PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LPSL+S R+YVVD    PRAP LHKVVEP +I  K  LSY HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE P
Sbjct:    5 CGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEIHAKCDLSYLHTSHCLASGEVMISALGDPRGNGKG-GFVLLDGETFEVKGTWEQP 180          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.739e-62
Identity = 109/177 (61.58%), Postives = 135/177 (76.27%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWENP 676
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++VS LGD  GN +G+ F+LLD E F VKG WE P
Sbjct:    5 CTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGKGS-FVLLDGETFEVKGTWEKP 180          

HSP 2 Score: 21.9422 bits (45), Expect = 4.739e-62
Identity = 7/14 (50.00%), Postives = 8/14 (57.14%), Query Frame = 1
Query:  670 KPSHSPAFRYDFWY 711
            KP  +    YDFWY
Sbjct:  179 KPGDAAPMGYDFWY 192          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.152e-61
Identity = 108/177 (61.02%), Postives = 134/177 (75.71%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWENP 676
            C   GPGY TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++V+ LGD  GN +G+ F+LLD E F VKG WE P
Sbjct:    5 CTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSHCLASGEVMVNTLGDLQGNGKGS-FVLLDGETFEVKGTWEKP 180          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.464e-61
Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 670
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+YVVD   +PRAP LHK VEP ++  K GL+  HT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVVDVGTDPRAPRLHKTVEPHEVYWKCGLANLHTSHCLGCGEIMISALGDPCGNGKG-GFVLLDGETFEVKGNWE 177          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.144e-60
Identity = 107/177 (60.45%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWENP 676
            C   GPGY TPLDAM GPRE+++Y+ C+Y  T  +KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIYVVD   +PRAP LHK VEP D+  K GL+ PHT+HCL SG I++S +GD  GN +G GF+LLD E F V G WE P
Sbjct:    5 CSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKG-GFVLLDGETFEVIGNWEQP 180          

HSP 2 Score: 22.7126 bits (47), Expect = 1.144e-60
Identity = 7/14 (50.00%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  670 KPSHSPAFRYDFWY 711
            +P  +  F YDFWY
Sbjct:  179 QPGDAAPFGYDFWY 192          
BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.172e-60
Identity = 109/175 (62.29%), Postives = 134/175 (76.57%), Query Frame = 2
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 670
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRA  LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD+E F VKG WE
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRALKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDAETFEVKGTWE 178          
The following BLAST results are available for this feature:
BLAST of FC932502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH3.109e-8573.10Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1_RAT2.320e-6262.15Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_HUMAN3.030e-6262.71Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1A_XENLA3.030e-6262.86Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_BOVIN3.958e-6263.28Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_MOUSE4.739e-6261.58Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP2_MOUSE1.152e-6161.02Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1B_XENLA7.464e-6161.71Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_DANRE1.144e-6060.45Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP1_PONAB2.172e-6062.29Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]

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Properties
Property NameValue
Genbank descriptionC34209C09EF PostHarveN Citrus clementina cDNA clone C34209C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932502 ID=FC932502; Name=FC932502; organism=Citrus clementina; type=EST; length=740bp
GTGTGATTGCGTTCTTATCAGCCATTCGCTTCCTATCTTGATCTTTCTTC
AAAGTCTTTGTGTTGTTCTGTCTGTGTTTTTTTTCTTGTAAGAAATGGCA
ACTGATACTGTGGTGGCTGAACACCGGTCGAGCAATAATGGGCATGGTTG
CTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATGTCTGGTC
CTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTGGAAGA
GAGAAGCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTCTTCTTC
TTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGTGATGAAC
TACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATTCATCT
GCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTCGTATATA
CGTAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCATAAAGTTG
TTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCCTCACACG
GCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTGGAGATAA
GGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCAGAATTCA
ATGTGAAAGGAAGATGGGAAAACCCAGTCACAGTCCTGCTTTTCGTTATG
ATTTCTGGTACCACCTCGACACAAAACATGATCAGCTCAT
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