FC932509

Overview
NameFC932509
Unique NameFC932509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12405 contig Ccv1_Contig12405:522..1253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932509 vs. ExPASy Swiss-Prot
Match: MA2B1_HUMAN (Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 5.202e-20
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   34 QLESLKGKSSS-GP----NTNALADALAIAQHHDAVSGTERQHVAADYALRISIGYTEAEKLVASSLAFLTASRSSVGQEKAVANFQQCPLLNISYCPPSEAVSFDGKSLVVVIYNPLGWKREEVVQIP 405
            QLE+L G +++ GP    ++  L +A+A+ QHHDAVSGT RQHVA DYA +++ G+   E L++++LA L   +          +F  C  LNIS CP S+  +       V++YNPLG K   +V++P
Sbjct:  414 QLEALVGLAANVGPYGSGDSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLAAGWGPCEVLLSNALARLRGFKD---------HFTFCQQLNISICPLSQTAA----RFQVIVYNPLGRKVNWMVRLP 529          

HSP 2 Score: 36.965 bits (84), Expect = 5.202e-20
Identity = 30/81 (37.04%), Postives = 39/81 (48.15%), Query Frame = 2
Query:  485 LQVSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPLGFSTYTVSIA---KPQVLA 718
            L VS    +VKD  GRTV S ++   ++  +             P E L     FSAS+P LGFSTY+V+     KPQ  A
Sbjct:  528 LPVSEGVFVVKDPNGRTVPSDVVIFPSSDSQAH-----------PPELL-----FSASLPALGFSTYSVAQVPRWKPQARA 592          
BLAST of FC932509 vs. ExPASy Swiss-Prot
Match: MA2B1_MACFA (Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.255e-19
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   34 QLESLKGKSSS-GP----NTNALADALAIAQHHDAVSGTERQHVAADYALRISIGYTEAEKLVASSLAFLTASRSSVGQEKAVANFQQCPLLNISYCPPSEAVSFDGKSLVVVIYNPLGWKREEVVQIP 405
            QLE+L G +++ GP    ++  L  A+A+ QHHDAVSGT RQHVA DYA +++ G+   E L++++LA L   +          +   C  LNIS CP S+  +       V++YNPLG K   +V++P
Sbjct:  415 QLEALVGLAANVGPYGSGDSAPLNKAMAVLQHHDAVSGTSRQHVADDYARQLAAGWVSCEVLLSNALARLRGFKD---------HLTFCRQLNISICPLSQTAA----RFQVIVYNPLGRKVNWMVRLP 530          

HSP 2 Score: 36.5798 bits (83), Expect = 4.255e-19
Identity = 30/81 (37.04%), Postives = 39/81 (48.15%), Query Frame = 2
Query:  485 LQVSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPLGFSTYTVSIA---KPQVLA 718
            L VS    +VKD  GRTV S ++   ++  +             P E L     FSAS+P LGFSTY+V+     KPQ  A
Sbjct:  529 LPVSEGVFVVKDPNGRTVPSDVVIYPSSDSQAH-----------PPELL-----FSASLPALGFSTYSVAQVPRWKPQARA 593          
BLAST of FC932509 vs. ExPASy Swiss-Prot
Match: MA2B1_BOVIN (Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.534e-19
Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   34 QLESLKGKSSS-GP----NTNALADALAIAQHHDAVSGTERQHVAADYALRISIGYTEAEKLVASSLAFLTASRSSVGQEKAVANFQQCPLLNISYCPPSEAVSFDGKSLVVVIYNPLGWKREEVVQIP 405
            QLE+L G +++ GP    ++  L +A+A+ QHHDAVSGT RQHVA DYA ++S G+   E L++++LA L+  +          +F  C  LNIS CP ++      +   V++YNPLG K + +V++P
Sbjct:  416 QLEALAGPAANVGPYGSGDSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKE---------DFAFCRKLNISICPLTQT----AERFQVIVYNPLGRKVDWMVRLP 531          

HSP 2 Score: 31.187 bits (69), Expect = 5.534e-19
Identity = 22/70 (31.43%), Postives = 32/70 (45.71%), Query Frame = 2
Query:  485 LQVSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPLGFSTYTVS 694
            L VS    +VKD GG+ V S ++ + ++  +                     L FSA VP +GFS Y+VS
Sbjct:  530 LPVSKHVYLVKDPGGKIVPSDVVTIPSSDSQE--------------------LLFSALVPAVGFSIYSVS 579          
BLAST of FC932509 vs. ExPASy Swiss-Prot
Match: MA2B1_FELCA (Lysosomal alpha-mannosidase OS=Felis catus GN=MAN2B1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.356e-19
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   34 QLESLKGKSSS-GP----NTNALADALAIAQHHDAVSGTERQHVAADYALRISIGYTEAEKLVASSLAFLTASRSSVGQEKAVANFQQCPLLNISYCPPSEAVSFDGKSLVVVIYNPLGWKREEVVQIP 405
            QLE+L G +++ GP    ++  L  A+A+ QHHDAVSGT +QHVA DYA +++ G+   E L++++LA L+ S+          +F  C  LN+S CP S+      K+  V IYNPLG K + +V++P
Sbjct:  416 QLEALAGPAANVGPYGSGDSAPLNQAMAVLQHHDAVSGTSKQHVADDYARQLAAGWDPCEVLLSNALARLSGSKE---------DFTYCRNLNVSVCPLSQT----AKNFQVTIYNPLGRKIDWMVRLP 531          

HSP 2 Score: 28.4906 bits (62), Expect = 9.356e-19
Identity = 23/70 (32.86%), Postives = 31/70 (44.29%), Query Frame = 2
Query:  485 LQVSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPLGFSTYTVS 694
            L VS    +V+D  G  V S ++ L ++             G+         L F ASVP LGFS Y+VS
Sbjct:  530 LPVSKHGFVVRDPNGTVVPSDVVILPSSD------------GQE--------LLFPASVPALGFSIYSVS 579          
BLAST of FC932509 vs. ExPASy Swiss-Prot
Match: MA2B1_CAVPO (Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.931e-18
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   34 QLESLKGKSSS-GP----NTNALADALAIAQHHDAVSGTERQHVAADYALRISIGYTEAEKLVASSLAFLTASRSSVGQEKAVANFQQCPLLNISYCPPSEAVSFDGKSLVVVIYNPLGWKREEVVQIP 405
            QLE+  G +++ GP    +++ L  A+A+ QHHDAVSGT +QHVA DYA +++ G+   E L++++LA L+ S+ +         F  C  LNIS CP S+      +   V++YNPLG K + +V++P
Sbjct:  412 QLEAQVGPAANVGPYGHGDSSPLNQAMAVLQHHDAVSGTSKQHVADDYARQLAAGWGPCEVLLSNALAKLSGSKET---------FLFCRDLNISICPFSQT----SERFQVLVYNPLGRKVDRMVRLP 527          

HSP 2 Score: 29.6462 bits (65), Expect = 9.931e-18
Identity = 26/83 (31.33%), Postives = 35/83 (42.17%), Query Frame = 2
Query:  485 LQVSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPLGFSTYT---VSIAKPQVLAQH 724
            L V     ++KD G  TV S ++ L+++             G          L F A VP LGFS Y+   VS   PQ  +QH
Sbjct:  526 LPVRKGLFLIKDPGNNTVPSTVVELTSS-------------GNPE-------LLFPALVPALGFSVYSVTRVSDQNPQTRSQH 588          
BLAST of FC932509 vs. ExPASy Swiss-Prot
Match: MANA_DICDI (Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   85 LADALAIAQHHDAVSGTERQHVAADYALRISIGYTEAEKLVASSLAFLTASRSSVGQEKAVANFQQCPLLNISYCPPSEAVSFDGKSLVVVIYNPLGWKREEVVQIP 405
            + + + IAQHHDAVSGTE+QHVA DYA R+SIG   + + + + +  L  +  +     A      CPLLN S CP ++ +S  G S+ V+IYN L W R E V+IP
Sbjct:  410 MREVMGIAQHHDAVSGTEQQHVADDYAERLSIGNCASLETINTVVGTLLTANGNSKSAAATPTISFCPLLNQSICPATDPLS-SGTSVPVLIYNSLSWTRNEPVRIP 515          
BLAST of FC932509 vs. ExPASy Swiss-Prot
Match: MA2B1_MOUSE (Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   34 QLESLKGKSSS-GP----NTNALADALAIAQHHDAVSGTERQHVAADYALRISIGYTEAEKLVASSLAFLTASRSSVGQEKAVANFQQCPLLNISYCPPSEAVSFDGKSLVVVIYNPLGWKREEVVQIP 405
            QLE+L G  ++ GP    ++  L +A+A+ QHHDAVSGT RQ+V  DYA +++ G+   E LV+++LA L+  +          NF  C  LNIS CP    VS   +   V +YNPLG K +++V++P
Sbjct:  414 QLEALVGPEANVGPYGSGDSAPLQEAMAVLQHHDAVSGTARQNVVNDYARQLAAGWGPCEVLVSNALARLSHYKQ---------NFSFCRELNISICP----VSQTSERFQVTLYNPLGRKVDQMVRLP 529          
The following BLAST results are available for this feature:
BLAST of FC932509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MA2B1_HUMAN5.202e-2039.53Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN... [more]
MA2B1_MACFA4.255e-1938.76Lysosomal alpha-mannosidase OS=Macaca fascicularis... [more]
MA2B1_BOVIN5.534e-1939.53Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B... [more]
MA2B1_FELCA9.356e-1940.31Lysosomal alpha-mannosidase OS=Felis catus GN=MAN2... [more]
MA2B1_CAVPO9.931e-1838.76Lysosomal alpha-mannosidase OS=Cavia porcellus GN=... [more]
MANA_DICDI1.313e-1743.93Lysosomal alpha-mannosidase OS=Dictyostelium disco... [more]
MA2B1_MOUSE4.669e-1540.31Lysosomal alpha-mannosidase OS=Mus musculus GN=Man... [more]
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Properties
Property NameValue
Genbank descriptionC34209D04EF PostHarveN Citrus clementina cDNA clone C34209D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932509 ID=FC932509; Name=FC932509; organism=Citrus clementina; type=EST; length=732bp
GGTCTTTCTTCGCTCTGAAATTAGGCAGCAAGGCAATTAGAATCCCTTAA
AGGAAAAAGCAGTTCAGGTCCAAACACAAATGCCTTGGCTGATGCTCTGG
CAATTGCTCAGCATCATGATGCAGTTAGTGGTACAGAACGGCAGCATGTT
GCTGCTGATTATGCTTTGCGAATTTCTATAGGATATACCGAGGCTGAGAA
ATTGGTTGCCTCTTCACTTGCCTTTTTGACAGCCTCAAGATCAAGTGTTG
GACAGGAGAAAGCGGTTGCAAACTTTCAGCAGTGTCCGCTTCTTAATATA
AGTTACTGTCCTCCATCAGAAGCAGTCTCGTTCGATGGGAAAAGCCTGGT
AGTTGTCATCTACAATCCTCTGGGATGGAAGAGGGAGGAAGTAGTACAAA
TTCCAAGAAATTGTGTATCCTTTTGTAACTCGCTTTTCGTTGTTTGATGA
TCTCTTCAGGATTACATGCGGCTTCTTAAAATTGCTACAGGTCTCCTCTG
AAAAGGTTATTGTTAAGGATTCTGGTGGGAGAACAGTTGAATCTCAGCTC
TTACCTCTGTCCAATGCCACACTGAGAATAAGAAATCGCTATGTTAAAGC
ATATTTGGGTAAAGCCCCAAGTGAAACACTTAAATATTGGCTTGCATTTT
CAGCATCAGTACCACCTCTTGGTTTCAGCACATATACTGTCTCAATTGCA
AAACCACAGGTCCTAGCTCAACATTTCATGGT
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