FC932514

Overview
NameFC932514
Unique NameFC932514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932514_ssr538 microsatellite FC932514_ssr538:538..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10342 contig Ccv1_Contig10342:2..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932514 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  112 MATEDPVVDTETLPQPESAEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 378
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of FC932514 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  112 MATEDPVVDTETLPQPESAEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 378
            MATE+PV+  E + + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEE-QAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of FC932514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA5.532e-1349.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC1.043e-1146.07Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34209D09EF PostHarveN Citrus clementina cDNA clone C34209D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932514 ID=FC932514; Name=FC932514; organism=Citrus clementina; type=EST; length=720bp
GGCACAACGAAATTACTAGTCCTCCACCACCCGCATTTTTAGATCCAATC
TTTCGTTATCTTTCTTGCTCGCTCTCCACTTCCTAATTTCTGAAACCCAA
TTCGATTCAAAATGGCCACTGAAGATCCCGTTGTGGACACGGAGACCCTT
CCTCAACCGGAATCCGCTGAACCGGTGGTAGAGGACAAACCGTCCTCCAA
AGCCGGCAAAGGCAAGACCTCTAAGGAGCCCAAAGCCAAGAAAGCCGCTG
CTCCGAGGAAGCCTAGAAGCCCTCCCTCTCATCCTCCGTATGAAGAGATG
ATTAAGGATGCAATTGTTACTTTGAAAGAGAAGACCGGTTCGAGTCAGTA
TGCAATTGCCAAATTTATTGAGGAGAAGCACAAGCAGTTGCCACCCAACT
TTAAGAAGCTGTTGCTGTTTCATTTGAAGAAGCTTGTGGGTTCCGGAAAG
CTCGTGAAGGTTAAGGGTTCCTTCAAGCTTCCATCGGCTAGGGCTGCCGT
TTCTAAGCCGGCTGCATCTGTTCCTGCTTCTCCGGCTAAGAAGAAGAAGC
CGGTTGCTGCTGGTAAGGCCAAAACTAAGGCGGCGCCCTCCAAGGCCAAA
GCTCCACCTAAGGCTAAGGCTAAGGCACCAGCTAAAGCTCCGGCCCAGGC
TAAGCCAGCTGCTAAACCCAAAGCCCAGCCGGCTGCCAAGACTAANGCGG
TGGCTGCCAAGACTAAAGCG
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