FC932518

Overview
NameFC932518
Unique NameFC932518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.389e-94
Identity = 167/245 (68.16%), Postives = 201/245 (82.04%), Query Frame = 1
Query:   28 MATDT-VVAEHRSSNNGH-GCCAKG-PGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSEFNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI---MGSTLAFTKA-STSHVSDGLMGA 741
            MAT+T VVA    SN G  GCC  G PGYATPL AMSGP EKL+YVT +YTGTG +KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLPSL+SGRIY +DT++NPRAPSL+K V+P +I  KTGL++PHTAHCLA+G+ILVSCLGD++GNA+GNGFLLLDS+FN+K RWEKPGHSP +GYDFWY    +H  +I    G+  AF+K  +  HV+DGL G+
Sbjct:    1 MATETEVVAPVTVSNGGSKGCCKYGGPGYATPLAAMSGPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYVDPKEIADKTGLAFPHTAHCLATGEILVSCLGDEEGNAKGNGFLLLDSDFNIKNRWEKPGHSPLYGYDFWY--QPRHKTMISTSWGAPKAFSKGFNLQHVADGLYGS 243          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.309e-68
Identity = 126/227 (55.51%), Postives = 159/227 (70.04%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLIMGSTLA---FTKA-STSHVSDGLMGASV 747
            C   GPGYATPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LPS++S RIYVVD    PRAP LHKV+EP +I  K  L   HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WEKPG     GYDFWY    +H+ ++     A   F    + +HV  GL G+ +
Sbjct:    5 CTKCGPGYATPLEAMKGPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVVDVGSEPRAPKLHKVIEPNEIHAKCNLGNLHTSHCLASGEVMISSLGDPQGNGKG-GFVLLDGETFEVKGTWEKPGGEAPMGYDFWY--QPRHNIMVSTEWAAPNVFKDGFNPAHVEAGLYGSHI 228          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.309e-68
Identity = 125/227 (55.07%), Postives = 160/227 (70.48%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLIMGSTLA---FTKA-STSHVSDGLMGASV 747
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++VS LGD  GN +G+ F+LLD E F VKG WEKPG +   GYDFWY    +H+ ++     A   F    + +HV  GL G+ +
Sbjct:    5 CTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGKGS-FVLLDGETFEVKGTWEKPGDAAPMGYDFWY--QPRHNVMVSTEWAAPNVFKDGFNPAHVEAGLYGSRI 228          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.309e-68
Identity = 121/199 (60.80%), Postives = 148/199 (74.37%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI 675
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++  K GL+ PHT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE  G S  FGYDFWY    +H+ +I
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVVDVGSDPRAPRIHKTVEPYEVFWKCGLANPHTSHCLGCGEIMISSLGDPCGNGKG-GFVLLDGETFEVKGNWEVEGESAQFGYDFWY--QPRHNVMI 199          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.808e-68
Identity = 124/227 (54.63%), Postives = 159/227 (70.04%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLIMGSTLA---FTKA-STSHVSDGLMGASV 747
            C   GPGY TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++V+ LGD  GN +G+ F+LLD E F VKG WEKPG +   GYDFWY    +H+ ++     A   F    + +HV  GL G+ +
Sbjct:    5 CTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSHCLASGEVMVNTLGDLQGNGKGS-FVLLDGETFEVKGTWEKPGGASPMGYDFWY--QPRHNVMVSTEWAAPNVFKDGFNPAHVEAGLYGSRI 228          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 6.495e-68
Identity = 120/199 (60.30%), Postives = 149/199 (74.87%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI 675
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRAP LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE+PG +   GYDFWY    +H+ +I
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDGETFEVKGTWERPGGAAPLGYDFWY--QPRHNVMI 200          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.108e-67
Identity = 121/199 (60.80%), Postives = 150/199 (75.38%), Query Frame = 1
Query:   85 CAK-GPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI 675
            C K GPGY +PL+AM GPRE+L+Y+ C+Y  TG E PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LPSL+S R+YVVD    PRAP LHKVVEP +I  K  LSY HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE+PG +   GYDFWY    +H+ +I
Sbjct:    5 CGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEIHAKCDLSYLHTSHCLASGEVMISALGDPRGNGKG-GFVLLDGETFEVKGTWEQPGGAAPMGYDFWY--QPRHNVMI 200          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.498e-67
Identity = 118/199 (59.30%), Postives = 147/199 (73.87%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI 675
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+YVVD   +PRAP LHK VEP ++  K GL+  HT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE  G +  FGYDFWY    +H+ +I
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVVDVGTDPRAPRLHKTVEPHEVYWKCGLANLHTSHCLGCGEIMISALGDPCGNGKG-GFVLLDGETFEVKGNWEAEGETAQFGYDFWY--QPRHNVMI 199          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.379e-67
Identity = 117/199 (58.79%), Postives = 147/199 (73.87%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI 675
            C   GPGY TPLDAM GPRE+++Y+ C+Y  T  +KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIYVVD   +PRAP LHK VEP D+  K GL+ PHT+HCL SG I++S +GD  GN +G GF+LLD E F V G WE+PG +  FGYDFWY    +H+ +I
Sbjct:    5 CSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKG-GFVLLDGETFEVIGNWEQPGDAAPFGYDFWY--QPRHNVMI 200          
BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.655e-66
Identity = 124/227 (54.63%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI---MGSTLAFTKA-STSHVSDGLMGASV 747
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S +GD  GN +G GF+LLD E F VKG WE  G +  FGYDFWY    +H+ +I    G+  AF        V  G+ G S+
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMISSIGDPYGNGKG-GFVLLDGETFEVKGNWEAEGEAAPFGYDFWY--QPRHNVMISTEWGAPKAFALGFKMEEVQAGMYGHSL 227          
The following BLAST results are available for this feature:
BLAST of FC932518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH1.389e-9468.16Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1_RAT1.309e-6855.51Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_MOUSE1.309e-6855.07Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP1A_XENLA1.309e-6860.80Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP2_MOUSE3.808e-6854.63Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1_HUMAN6.495e-6860.30Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_BOVIN1.108e-6760.80Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1B_XENLA5.498e-6759.30Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_DANRE9.379e-6758.79Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP1_XENTR4.655e-6654.63Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionC34209E01EF PostHarveN Citrus clementina cDNA clone C34209E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932518 ID=FC932518; Name=FC932518; organism=Citrus clementina; type=EST; length=750bp
GCTGTCTGTGTTTTTTTTCTTGTAGAAATGGCAACTGATACTGTGGTGGC
TGAACACCGGTCGAGCAATAATGGGCATGGTTGCTGCGCGAAAGGGCCTG
GGTATGCAACTCCACTCGATGCCATGTCTGGTCCTAGAGAGAAACTTCTC
TATGTCACTTGTCTTTACACTGGTACTGGAAGAGAGAAGCCTGATTACCT
AGCGACAGTGGATGCGGATCCTAGCTCTTCTTCTTATTCAAAAGTTATTC
ATCGGCTCCCTGTGCCATACATTGGTGATGAACTACATCATTCGGGATGG
AATTCATGTAGCTCATGCTATGGAGATTCATCTGCTCAACGGCGTTTTCT
TGTCTTGCCTTCTTTGGTATCTGGTCGTATATACGTAGTTGACACACAAA
AAAATCCAAGGGCTCCCTCTTTGCATAAAGTTGTTGAGCCTGCAGATATT
GTACAGAAGACAGGATTATCTTATCCTCACACGGCTCATTGCCTTGCTTC
TGGTGATATCCTGGTGTCATGCCTTGGAGATAAGGATGGAAATGCTGAGG
GAAATGGATTTCTTCTCCTTGACTCAGAATTCAATGTGAAAGGAAGATGG
GAAAAACCAGGTCACAGTCCTGCTTTCGGTTATGATTTCTGGTACCACCT
CGACACAAAACATGATCAGCTCATCATGGGGAGCACCCTGGCTTTCACAA
AGGCTTCAACTTCACATGTCTCTGATGGTCTTATGGGAGCATCTGTTGTG
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