FC932519

Overview
NameFC932519
Unique NameFC932519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15527 contig Ccv1_Contig15527:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932519 vs. ExPASy Swiss-Prot
Match: DI3L2_MOUSE (DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 52/175 (29.71%), Postives = 80/175 (45.71%), Query Frame = 1
Query:    1 QLASYFCSGDFKDDTDWGHYALAFPVYTHFTAPLRRYPDLVVHRTLNAALEAEKLYWKHRRTLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTVYIEKLAIERRIY 525
            Q+A YFCSG  +D   + HYAL  P+YTHFT+P+RR+ D++VHR L AAL   +       TL K                                                 A HCNDR++A + V++  + L+  +L+K+   L SEA V+ +  +   V + +  +++RIY
Sbjct:  668 QMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALGYSEQPDVEPDTLQKQ------------------------------------------------ADHCNDRRMASKRVQELSIGLFFAVLVKESGPLESEAMVMGVLNQAFDVLVLRFGVQKRIY 794          
BLAST of FC932519 vs. ExPASy Swiss-Prot
Match: DIS3L_SCHPO (Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe GN=SPAC2C4.07c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 55/208 (26.44%), Postives = 91/208 (43.75%), Query Frame = 1
Query:    7 ASYFCSGDFKDDTDWGHYALAFPVYTHFTAPLRRYPDLVVHRTLNAALEAEKLYWKHRRTLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKK------KEVLLSEARVLALGPRFMTVYIEKLAIERRIYY---DEVEGLIVERLDTTSTLVLSLCAQK 603
            A YFC+GDF + TDW HYAL+F  YTHFT+P+RRYPD++VHR L  +L                                 K+ +  ++ +    VAA                HCN++K     V++   +L++ + + +      K+ +  +A    +    + VYI +  I  R+     D ++  IV   D++  + L   +QK
Sbjct:  738 AEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSL---------------------------------KNTSPGIDKKNCSLVAA----------------HCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMPVQAFATRISGNSIDVYISEYGISNRVDLSSDDRIKSFIVAPDDSSVKITLFDDSQK 896          
BLAST of FC932519 vs. ExPASy Swiss-Prot
Match: DI3L2_XENTR (DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 QLASYFCSGDFKDDTDWGHYALAFPVYTHFTAPLRRYPDLVVHRTLNAAL 150
            Q+A YFC+G  KD+T + HYAL  P+YTHFT+P+RR+ D++VHR L A+L
Sbjct:  641 QMAVYFCTGALKDETLFHHYALNVPLYTHFTSPIRRFADVIVHRLLAASL 690          
The following BLAST results are available for this feature:
BLAST of FC932519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DI3L2_MOUSE1.067e-1529.71DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 ... [more]
DIS3L_SCHPO5.852e-1426.44Dis3-like exonuclease C2C4.07c OS=Schizosaccharomy... [more]
DI3L2_XENTR3.550e-1158.00DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=d... [more]
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Properties
Property NameValue
Genbank descriptionC34209E02EF PostHarveN Citrus clementina cDNA clone C34209E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932519 ID=FC932519; Name=FC932519; organism=Citrus clementina; type=EST; length=791bp
CAATTGGCCTCCTACTTTTGTAGTGGTGATTTCAAAGATGATACAGATTG
GGGTCATTATGCACTTGCTTTTCCTGTTTATACGCATTTTACTGCACCAC
TGCGCCGGTATCCTGATCTTGTAGTACACAGGACATTGAATGCAGCTTTA
GAAGCTGAGAAGTTGTACTGGAAGCATAGAAGAACGTTGCCAAAAAATAA
CCATAGGGAGGGAGTGAGAGGAAGATTTTTAACTGGTATTTTTTACGATA
AAGATGCTGCTGAATCTCTTGAAGGCAGGGAAGCATTATCAGTTGCAGCA
TTAAAATATGGAGTTCCCTGTGCTGATATACTCGTGAATGTTGCTACACA
TTGTAATGATCGAAAGCTCGCTTGTAGGAATGTTAAGGATGCCTGTGTGA
AACTCTATATGTGGATTTTGCTGAAGAAAAAAGAGGTTTTATTGTCGGAA
GCAAGAGTGTTGGCTCTTGGGCCAAGATTTATGACCGTATACATTGAGAA
GCTGGCTATTGAACGGCGAATATATTATGATGAAGTTGAAGGTTTGATAG
TAGAACGGCTTGACACTACTTCTACATTGGTGCTTAGTTTATGTGCTCAA
AAACGTTCATTTAAGAGAGGTGGTCCTGGTAACTATAAAGCTCTTGAAGA
GTTGCATTGGTTGTTAGACCTATGACCTGAAGAGGACATGGCATGTTTGG
AGCAGTGTTAACAGTGCTTTACACTGATGCAATGCTAACGACAGTGTCCG
GATCCTCTCAACTCTGGAGTGATCTGGGGTATCCCTTTACT
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