FC932525

Overview
NameFC932525
Unique NameFC932525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15528 contig Ccv1_Contig15528:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB3_ORYSJ (Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.881e-26
Identity = 53/87 (60.92%), Postives = 73/87 (83.91%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQP 617
            +E+KFR++DGTDI    Y  STTV+ LK+ ++A WPQ K ITPK++ND+KLI+AG+ILEN+RTLA+SR+ VG++P GV TMHVV++P
Sbjct:    8 IEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLAESRVPVGEVPGGVITMHVVVRP 94          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB3_ARATH (Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.947e-23
Identity = 47/91 (51.65%), Postives = 71/91 (78.02%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAK 629
            +++KFR+YDG+DI    Y++++TV  LKQ++V++WP+GKT+ PK IN+VKLI +GKILEN++T+   +   GD+  GV  MHVV+QP +AK
Sbjct:    7 IDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAK 97          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB4_ORYSJ (Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.993e-22
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 3
Query:  357 VELKFRIYDGTDI----CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAK 629
            VE+KFR++DG+DI    C+   A +TTVA LK ++VA+WP+ KTI PK+ NDVKLI  GKILEND+ +A  R   GDLPS   TMHVV+QP  AK
Sbjct:   23 VEVKFRLFDGSDIGPLRCN---AVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDKNIAQCRAPFGDLPSTAITMHVVVQPSSAK 114          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB6_ARATH (Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.603e-22
Identity = 48/86 (55.81%), Postives = 70/86 (81.40%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 614
            +ELKFR+ DGTDI    Y  S TV++LK++L+++WP+ K  TPK++ND+KLI+AGKILEN+RTLA+SR+ V +LP  + TMH+V++
Sbjct:    8 IELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIITMHIVLR 93          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB5_ARATH (Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.440e-22
Identity = 50/89 (56.18%), Postives = 71/89 (79.78%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSR--ITVGDLPSGVTTMHVVIQP 617
            +ELKFR+ DGTDI    Y+   TVA+LK++++A+WP+ K   PK IN+VKLI+ GKILEN++TL+++R  IT+G+LP  VTTMHVV++P
Sbjct:    7 IELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKILENNKTLSEARSLITIGELPGIVTTMHVVLRP 95          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB4_ARATH (Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.759e-21
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 614
            VELKFR+YDG+D+    Y+ + TV+ LK+++V+EWP+ K I PKS +D+KLI+AGKILEN +T+A  +    DLP  V TMHVV+Q
Sbjct:    7 VELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILENGKTVAQCKAPFDDLPKSVITMHVVVQ 92          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB2_ARATH (Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.089e-20
Identity = 47/91 (51.65%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAK 629
            +E+KFR+ DG+DI    +  +TTVATLK+ +VA+WP+ K   PK++ DVKLI AG+ILEN++T+ D R  VG+    VTTMHV+IQ  V +
Sbjct:    8 LEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTE 98          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB2_ORYSJ (Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.595e-19
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 614
            VE++FR+ DG+DI    +  +TTV  LK+ ++A WPQGK I P+++NDV +I+AG++LEN+RTLA+SR    + P G  TMHVV++
Sbjct:   14 VEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVLENNRTLAESRNLAAESPEGPITMHVVVR 99          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB1_ORYSJ (Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.595e-19
Identity = 45/85 (52.94%), Postives = 68/85 (80.00%), Query Frame = 3
Query:  360 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 614
            E+KFR+ DGTDI    Y +++TVATLK+ +VA+WP+ K   P+++ND+KLI+AGKILEN++TL++ +  + D  SG+TTMHVV++
Sbjct:   10 EIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKILENNKTLSECKSPICDF-SGLTTMHVVVR 93          
BLAST of FC932525 vs. ExPASy Swiss-Prot
Match: MUB1_ARATH (Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.080e-18
Identity = 43/91 (47.25%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  357 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAK 629
            +E+KFR+ DG+DI    +  +TTV+ LK+ +++EWP+ K   PK++ +VKLI AGK+LEN +T+ D R  V +L   VTTMHV+IQ  V +
Sbjct:    8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTE 98          
The following BLAST results are available for this feature:
BLAST of FC932525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MUB3_ORYSJ3.881e-2660.92Membrane-anchored ubiquitin-fold protein 3 OS=Oryz... [more]
MUB3_ARATH8.947e-2351.65Membrane-anchored ubiquitin-fold protein 3 OS=Arab... [more]
MUB4_ORYSJ1.993e-2257.89Membrane-anchored ubiquitin-fold protein 4 OS=Oryz... [more]
MUB6_ARATH2.603e-2255.81Membrane-anchored ubiquitin-fold protein 6 OS=Arab... [more]
MUB5_ARATH4.440e-2256.18Membrane-anchored ubiquitin-fold protein 5 OS=Arab... [more]
MUB4_ARATH3.759e-2154.65Membrane-anchored ubiquitin-fold protein 4 OS=Arab... [more]
MUB2_ARATH7.089e-2051.65Membrane-anchored ubiquitin-fold protein 2 OS=Arab... [more]
MUB2_ORYSJ4.595e-1950.00Membrane-anchored ubiquitin-fold protein 2 OS=Oryz... [more]
MUB1_ORYSJ4.595e-1952.94Membrane-anchored ubiquitin-fold protein 1 OS=Oryz... [more]
MUB1_ARATH5.080e-1847.25Membrane-anchored ubiquitin-fold protein 1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC34209E08EF PostHarveN Citrus clementina cDNA clone C34209E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932525 ID=FC932525; Name=FC932525; organism=Citrus clementina; type=EST; length=790bp
GAATATCCGCAAACAAACACAATTAAACAATTGAGCAAATAAGAATGCCC
CCTTACTGTAGCCAAGAAGTGAAAAACCCTAACTCGATTCTCATGGCTTC
GTGATCAGGAATTGAGTGAACGAAGAGTGATCGGATCATATGAAGTGCTT
GTTGGATCGGTTTGGCTATTCAGCGGCTGATTTAGATGCGCCTTTTTTGC
ATGATTGTACTCCAAACAAACCTTTTGTCAGATTCACGCAGGTAAGTAGG
GTGAGACAGAATTCTGGAACTGGGACTGAAGCCATTGATTTGGTATTACA
TCGGATCTGCAAGCTGAGAAAAGTAGAAGGGCACTATGGGTGAAGGAGAG
GAGTGTGTTGAGCTGAAATTTCGCATCTATGATGGAACAGATATTTGTCA
TGGTACCTATGCGTCATCTACCACAGTTGCAACTCTTAAGCAGCAGCTGG
TTGCTGAGTGGCCCCAAGGTAAAACAATCACACCCAAATCAATAAATGAT
GTAAAACTCATACATGCTGGTAAAATTTTGGAGAATGACAGGACACTTGC
AGATTCAAGAATAACTGTTGGTGACCTTCCTAGTGGTGTTACTACCATGC
ATGTTGTCATACAGCCCCTTGTTGCTAAAAGAAGACAGAGAAGACCCAGG
AAGAGATGCAGAAGCAGAATTCATGTGCATGTATTATCCTTTAAAGTGGG
GAGAATGGTTTGTGGCTTCCATGAGTGAACAGCATATAGAAGATCTACGA
TCCAGCTTCTATTGCTTCTCGTACTGCCGCTGCCTGATCC
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