FC932526

Overview
NameFC932526
Unique NameFC932526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5832 contig Ccv1_Contig5832:303..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932526 vs. ExPASy Swiss-Prot
Match: PP157_ARATH (Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.103e-77
Identity = 138/241 (57.26%), Postives = 180/241 (74.69%), Query Frame = 2
Query:    2 SSPQFIALNALSHLLSPDITHPRLSSLAFPLYMRITEESWFQWNPKLVAELIAFLDKQGQREEAETLVLETLSKLESRERELVLFYCNLIDSFCKHGSKRGFDDTYTRLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLDPAGFECKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVFESCSTI 724
            +SP+ +ALN LSHLLS   +HP LS  A  LY  ITE SWF WNPKL+AELIA L+KQ + +E+ETL+   +S+L+S ER+  LF CNL++S  K GS +GF +   RL +++  SSSVYVK QA KSM+SGLC M QPH+AE +IEEMR++ + P  FE K ++YGYGRLGL +DM R+V++M ++G ++DTVCSNMVLSSYG H+ L +M  WLQK+K   +PFS+RTYNSV  SC TI
Sbjct:  122 ASPKSVALNVLSHLLSDQTSHPHLSFFALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLCNLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIEEMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHDALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTI 362          
BLAST of FC932526 vs. ExPASy Swiss-Prot
Match: PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 51/222 (22.97%), Postives = 106/222 (47.75%), Query Frame = 2
Query:   62 HPRLSSL----AFPLYMRITEESWFQWNPKLVAELIAFLDKQGQREEAETLVLETLSKLESRERELVLFYCNLIDSFCKHGSKRGFDDTYTRLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLDPAGFECKCIIYGYGRLGLLEDME-RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVFES 712
            H R+++L    A  ++  + E+ W++ N  +  +LI  L K  Q E+A  L  E +++      E+   Y  L+ ++ + G    FD  +T L ++  SS +          +I    ++    + ++L+ +MR +G+ P       +I  YG+  +  +ME  ++  +  D  + D+   N  L ++G + ++  M    +K + SGI  ++RT+N + +S
Sbjct:  122 HERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEV---YTALVSAYSRSGR---FDAAFTLLERM-KSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 336          
BLAST of FC932526 vs. ExPASy Swiss-Prot
Match: PP376_ARATH (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 50/202 (24.75%), Postives = 93/202 (46.04%), Query Frame = 2
Query:  113 ESWFQWNPKLVAELIAFLDKQGQREEAETLVLETLSK-LESRERELVLFYCNLIDSFCKHGSKRGFDDTYTRLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLDPAGFECKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVFESC 715
            +S  + N    + L+  L K+G+ E+AE ++   ++K L   E    + Y  +ID +C+ G   G      R+         +     A   +I   CE+G+   AE  + +M++KG+ P+      +I GYGR    +    I+ +ME +GT  + V    +++     ++L    +  + M+D G+   VR YN + + C
Sbjct:  347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNE----VIYNTMIDGYCRKGDLVG-----ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGC 539          
The following BLAST results are available for this feature:
BLAST of FC932526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP157_ARATH1.103e-7757.26Pentatricopeptide repeat-containing protein At2g17... [more]
PP424_ARATH3.996e-1122.97Pentatricopeptide repeat-containing protein At5g48... [more]
PP376_ARATH3.996e-1124.75Pentatricopeptide repeat-containing protein At5g12... [more]
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Properties
Property NameValue
Genbank descriptionC34209E09EF PostHarveN Citrus clementina cDNA clone C34209E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932526 ID=FC932526; Name=FC932526; organism=Citrus clementina; type=EST; length=726bp
ATCATCACCTCAGTTTATAGCTCTCAACGCCCTCTCTCATCTGCTCTCCC
CTGATATCACCCATCCTCGCCTCTCCTCTCTCGCCTTTCCGTTGTACATG
AGAATAACTGAAGAGTCATGGTTTCAATGGAATCCTAAACTAGTTGCAGA
GCTAATTGCATTCTTAGATAAACAAGGACAACGCGAGGAAGCAGAAACTC
TAGTCCTTGAAACCCTTTCTAAGTTGGAGTCTCGCGAAAGAGAGCTGGTT
CTCTTCTACTGCAATTTAATTGATTCTTTCTGCAAACATGGTTCAAAGAG
AGGATTTGATGATACATATACTCGCTTGAATCAACTTGTTAATAGCTCTT
CCTCTGTTTATGTGAAACGCCAAGCTTTGAAATCAATGATCAGCGGTTTA
TGTGAAATGGGCCAACCCCACGAGGCAGAGAATCTGATTGAAGAGATGAG
GGTTAAAGGACTCGACCCGGCAGGTTTCGAGTGTAAGTGTATTATATATG
GGTATGGAAGATTGGGGTTGCTTGAAGATATGGAGAGAATTGTTAACCAA
ATGGAGAGTGACGGGACTCGGGTCGATACGGTTTGTTCGAATATGGTTCT
TTCTTCGTATGGAGATCACAATGAGCTATCTAGAATGGTTTTGTGGCTGC
AAAAGATGAAGGATTCGGGAATTCCATTCTCAGTAAGGACTTACAATTCT
GTGTTTGAATCATGTTCCACAATCAT
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