FC932528

Overview
NameFC932528
Unique NameFC932528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length210
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9316 contig Ccv1_Contig9316:1..211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932528 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.603e-21
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQG 173
            YAAARFVESSLRALDGDGDVYEC FVES LT+LPFFASRVK+G+NG+E++I SDLQG
Sbjct:  311 YAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQG 367          
BLAST of FC932528 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.815e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLIS 158
            YAA +F ++ LR L GD  V EC FV S +TELPFFAS+V+LGRNG+E + S
Sbjct:  273 YAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS 324          
BLAST of FC932528 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.565e-11
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 3
Query:    3 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLI 155
            YA A F ++ L+ L+G  DV EC FV+S +TELPFFAS+VKLG+NGVES++
Sbjct:  263 YAGALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVL 313          
BLAST of FC932528 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.375e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLIS 158
            YAA +F ++ LR L GD  V EC FV S +TELPFFA++V+LGRNG++ + S
Sbjct:  273 YAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYS 324          
BLAST of FC932528 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.462e-11
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLIS 158
            YAA++F ++ LR L GD  + EC FV S +TELPFFAS+V+LGR G+E ++S
Sbjct:  273 YAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILS 324          
The following BLAST results are available for this feature:
BLAST of FC932528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MDHP_ARATH1.603e-2184.21Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHG_CITLA8.815e-1259.62Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHM_CITLA2.565e-1160.78Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHG_CUCSA4.375e-1155.77Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_ORYSJ7.462e-1155.77Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC34209E11EF PostHarveN Citrus clementina cDNA clone C34209E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932528 ID=FC932528; Name=FC932528; organism=Citrus clementina; type=EST; length=210bp
CATATGCAGCAGCAAGATTTGTCGAGTCTTCACTTCGTGCTCTTGATGGA
GATGGGGACGTGTACGAATGCGTTTTCGTGGAGTCCAATCTGACTGAGCT
TCCGTTCTTTGCATCGAGGGTTAAGCTTGGAAGGAATGGTGTTGAATCTT
TGATTTCATCTGATCTCCAGGGTTGACTGAGTATGAACAAAGGCTTTGGA
AGCCCTTAAC
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