FC932530

Overview
NameFC932530
Unique NameFC932530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15314 contig Ccv1_Contig15314:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHLY_HEVBR (Hevamine-A OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.083e-85
Identity = 156/213 (73.24%), Postives = 172/213 (80.75%), Query Frame = 2
Query:   20 MARNSPAIATFVSLLVTLSLIKASQ--GAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            MA+ + AI   + LL+ +SLI +S     GGIAIYWGQNGNEGTLT TC+T KY+YVNIAFLNKFGNGQTP+ NLAGHCNPAAGGC +VS+ I+SCQ  GIKVM                DAKNVADYLWNNFLGG SSSRPLG AVLDGIDFDIE GSTL+WDDLAR+LSAYS +GKKVYLTAAPQCPFPDR+LG ALNTGLFDYVWVQFYN
Sbjct:    1 MAKRTQAI---LLLLLAISLIMSSSHVDGGGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVWVQFYN 210          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIT3_VITVI (Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.282e-78
Identity = 149/214 (69.63%), Postives = 163/214 (76.17%), Query Frame = 2
Query:   20 MARNSPAIATFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSA---YSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            MAR   +    +SL V L+L++ S  AGGIAIYWGQNGNEGTLT TC TGKY+YVNIAFLNKFGNGQTPE NLAGHCNPA+ GC  VS  I++CQ+ GIKVM                DA+NVA+YLWNNFLGG SSSRPLG AVLDGIDFDIE GSTLHWDDLAR LS       RG+KVYLTAAPQCPFPD+  G ALNTGLFDYVWVQFYN
Sbjct:    1 MARTPQSTPLLISLSV-LALLQTSY-AGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLAGHCNPASNGCTSVSTGIRNCQNRGIKVMLSIGGGAGSYSLSSSNDAQNVANYLWNNFLGGQSSSRPLGDAVLDGIDFDIELGSTLHWDDLARALSRIEFQQERGRKVYLTAAPQCPFPDKVPGTALNTGLFDYVWVQFYN 212          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIA_ARATH (Acidic endochitinase OS=Arabidopsis thaliana GN=CHIB1 PE=2 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 9.509e-74
Identity = 133/197 (67.51%), Postives = 149/197 (75.63%), Query Frame = 2
Query:   65 VTLSLIKASQGA-GGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            ++ SL K S  + GGIAIYWGQNGNEG L++TCATG+YAYVN+AFL KFGNGQTPE NLAGHCNPAA  C      +K CQS GIKVM                DAK +ADYLWNNFLGG SSSRPLG AVLDGIDF+IE GS  HWDDLAR LS +S RG+K+YLT APQCPFPDR +G+ALNT  FDYVW+QFYN
Sbjct:   17 ISCSLSKPSDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFPDRLMGSALNTKRFDYVWIQFYN 213          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIA_TOBAC (Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.127e-66
Identity = 123/202 (60.89%), Postives = 146/202 (72.28%), Query Frame = 2
Query:   47 TFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            +F+   + L L      AG I IYWGQNGNEG+L  TCAT  YA VNIAFL  FGNGQ P  NLAGHC+P AG C  +S+ I++CQ+ GIKVM                DA+NVA+YLWNN+LGG S++RPLG AVLDGIDFDIE G+T HWD+LA+ LS +S + +KVYLTAAPQCPFPD +L  AL+TGLFDYVWVQFYN
Sbjct:    5 SFLLTALVLFLRALKLEAGDIVIYWGQNGNEGSLADTCATNNYAIVNIAFLVVFGNGQNPVLNLAGHCDPNAGACTGLSNDIRACQNQGIKVMLSLGGGAGSYFLSSADDARNVANYLWNNYLGGQSNTRPLGDAVLDGIDFDIEGGTTQHWDELAKTLSQFSQQ-RKVYLTAAPQCPFPDTWLNGALSTGLFDYVWVQFYN 205          

HSP 2 Score: 22.3274 bits (46), Expect = 8.127e-66
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  652 HPPCQYSSG 678
            +PPCQYS G
Sbjct:  206 NPPCQYSGG 214          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIA_PHAAN (Acidic endochitinase OS=Phaseolus angularis PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.197e-62
Identity = 117/197 (59.39%), Postives = 135/197 (68.53%), Query Frame = 2
Query:   62 LVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            L+ +S  K S  AGGI++YWGQNGNEG+L   C TG Y YVNIAFL  FG GQTP+ NLAGHCNP+   C V SD IK CQS  IKV+                DA  VA+Y+WNNFLGG SSSRPLG A+LDG+DFDIE G+  HWDDLAR L  ++S   ++ LTAAPQCP PD  L  A+ TGLFD VWVQFYN
Sbjct:   18 LLFISFFKPSH-AGGISVYWGQNGNEGSLADACNTGNYKYVNIAFLFTFGGGQTPQLNLAGHCNPSINNCNVFSDQIKECQSKDIKVLLSLGGASGSYSLTSADDATQVANYIWNNFLGGQSSSRPLGDAILDGVDFDIESGTGEHWDDLARALKGFNS---QLLLTAAPQCPIPDAHLDTAIKTGLFDIVWVQFYN 210          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIA_CICAR (Acidic endochitinase OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.429e-61
Identity = 113/197 (57.36%), Postives = 141/197 (71.57%), Query Frame = 2
Query:   62 LVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            L+ +SL+  S  A GIA+YWGQNGNEG+L   C T  Y +VNIAFL+ FGNGQ P+ NLAGHC+P+  GC   S  I++CQ+ GIKV+                +A  +A+YLWNNFLGGTS+SRPLG AVLDGIDFDIE G   H+D+LA+ L+ +S   +KVYL+AAPQCP+PD  L +A+ TGLFDYVWVQFYN
Sbjct:   11 LLLISLLIKSSNAAGIAVYWGQNGNEGSLQDACNTNNYQFVNIAFLSTFGNGQNPQINLAGHCDPSTNGCTKFSPEIQACQAKGIKVLLSLGGGAGSYSLNSAEEATTLANYLWNNFLGGTSTSRPLGDAVLDGIDFDIESGGQ-HYDELAKALNGFSQ--QKVYLSAAPQCPYPDAHLDSAIQTGLFDYVWVQFYN 204          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIB_TOBAC (Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.068e-61
Identity = 116/198 (58.59%), Postives = 138/198 (69.70%), Query Frame = 2
Query:   59 LLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            L + L L+ +   AG I +YWGQ+  EG L  TC +G Y  VNIAFL+ FGN QTP+ NLAGHC P++GGC+ ++ +I+ CQS GIK+M                DA+ VADYLWNNFLGG SS RPLG AVLDGIDFDIE G   H+  LAR LS +  +GKK+YLTAAPQCPFPD+ L  AL TGLFDYVWVQFYN
Sbjct:   11 LPIFLLLLTSKVKAGDIVVYWGQDVGEGKLIDTCNSGLYNIVNIAFLSSFGNFQTPKLNLAGHCEPSSGGCQQLTKSIRHCQSIGIKIMLSIGGGTPTYTLSSVDDARQVADYLWNNFLGGQSSFRPLGDAVLDGIDFDIELGQP-HYIALARRLSEHGQQGKKLYLTAAPQCPFPDKLLNGALQTGLFDYVWVQFYN 207          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIA_CUCSA (Acidic endochitinase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.068e-61
Identity = 117/204 (57.35%), Postives = 138/204 (67.65%), Query Frame = 2
Query:   41 IATFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            I T +S+   LS I  S  A GIAIYWGQNGNEG+L STCATG Y +VNIAFL+ FG+GQ P  NLAGHCNP   GC  +SD I SC+S  +KV+                DAK VA+++WN++LGG S SRPLGAAVLDG+DFDIE GS   WD LA+ L  +     +V L+AAPQCP PD  L AA+ TGLFD VWVQFYN
Sbjct:    6 ITTTLSIFFLLSSIFRSSDAAGIAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQAPVLNLAGHCNPDNNGCAFLSDEINSCKSQNVKVLLSIGGGAGSYSLSSADDAKQVANFIWNSYLGGQSDSRPLGAAVLDGVDFDIESGSGQFWDVLAQELKNFG----QVILSAAPQCPIPDAHLDAAIKTGLFDSVWVQFYN 205          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIE_BETVU (Acidic endochitinase SE2 OS=Beta vulgaris GN=SE2 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.630e-57
Identity = 114/211 (54.03%), Postives = 138/211 (65.40%), Query Frame = 2
Query:   20 MARNSPAIATFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            MA    ++   +SLL+  S  ++S G+  I IYWGQNG+EG+L  TC +G Y  V +AF+  FGNGQTP  NLAGHC+PA   C  +S  IK+CQ  GIKV+                DA   ADYLWN +LGG SS+RPLG AVLDGIDFDIE G    WDDLAR L+ +++  K VYL+AAPQCP PD  L  A+ TGLFDYVWVQFYN
Sbjct:    1 MAAKIVSVLFLISLLIFASF-ESSHGSQ-IVIYWGQNGDEGSLADTCNSGNYGTVILAFVATFGNGQTPALNLAGHCDPATN-CNSLSSDIKTCQQAGIKVLLSIGGGAGGYSLSSTDDANTFADYLWNTYLGGQSSTRPLGDAVLDGIDFDIESGDGRFWDDLARALAGHNNGQKTVYLSAAPQCPLPDASLSTAIATGLFDYVWVQFYN 208          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI1_RHINI (Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.006e-31
Identity = 80/211 (37.91%), Postives = 111/211 (52.61%), Query Frame = 2
Query:   53 VSLLVTLSLIKASQGAGGIAIYWGQNG-----NEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHC------NPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            ++  +T +L   S     +  YWGQN       +G+L S C +G+   + ++FLNKF  G  PE NLA  C      N     C  V   IK+CQS G+KV+                + +  A+ +WN F GGTS +RP   AV+DGID DIE GS+  +   A F++A  S+G    + AAPQCPFPD  LG+ ++    D+V VQFYN
Sbjct:   11 IAAFITSTLAAYSSNGVNVMYYWGQNSAGGSNTQGSLVSYCQSGQVDVIILSFLNKFNMGGLPEINLASACEQTFFPNTNLLHCPTVGSDIKTCQSNGVKVLLSLGGAAGSYGFSSDSEGQTFAETIWNLFGGGTSDTRPFDDAVIDGIDLDIEGGSSTGY---AAFVTALRSKG-HFLIGAAPQCPFPDAILGSVIDAVGLDFVNVQFYN 217          
The following BLAST results are available for this feature:
BLAST of FC932530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHLY_HEVBR1.083e-8573.24Hevamine-A OS=Hevea brasiliensis PE=1 SV=2[more]
CHIT3_VITVI1.282e-7869.63Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE... [more]
CHIA_ARATH9.509e-7467.51Acidic endochitinase OS=Arabidopsis thaliana GN=CH... [more]
CHIA_TOBAC8.127e-6660.89Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=... [more]
CHIA_PHAAN2.197e-6259.39Acidic endochitinase OS=Phaseolus angularis PE=2 S... [more]
CHIA_CICAR2.429e-6157.36Acidic endochitinase OS=Cicer arietinum PE=2 SV=1[more]
CHIB_TOBAC7.068e-6158.59Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1[more]
CHIA_CUCSA7.068e-6157.35Acidic endochitinase OS=Cucumis sativus PE=1 SV=1[more]
CHIE_BETVU3.630e-5754.03Acidic endochitinase SE2 OS=Beta vulgaris GN=SE2 P... [more]
CHI1_RHINI2.006e-3137.91Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34209F01EF PostHarveN Citrus clementina cDNA clone C34209F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932530 ID=FC932530; Name=FC932530; organism=Citrus clementina; type=EST; length=719bp
GACTTGCATAATTGCAGAAATGGCCAGAAACTCTCCAGCAATAGCAACAT
TCGTCTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCC
GGCGGCATCGCAATCTATTGGGGCCAAAACGGCAACGAGGGTACCCTCAC
TTCAACCTGTGCCACAGGCAAATATGCTTATGTCAACATAGCTTTCCTGA
ACAAGTTTGGCAACGGCCAGACCCCTGAAACTAACCTTGCCGGCCACTGC
AACCCTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTG
TCAGAGCTGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTA
GCTACTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTG
TGGAACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGC
TGTGTTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATT
GGGATGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAA
GTTTACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGG
TGCTGCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACA
ACACCCACCTTGTCAGTATAGTTCAGGAATACCCAGAATCTTATAAGTCA
TTTACAGATGGGCTCATCA
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