FC932533

Overview
NameFC932533
Unique NameFC932533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932533_ssr180 microsatellite FC932533_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: HYES_HUMAN (Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  232 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG 666
            + +H   +G+GPAV   HGFPE WYSWR Q+  L+  GYR +A D++GYG++ APP +  Y                   Q   +GHDWG ++ WY  LF P+RV+A+ +++ PF P NP + PL + +A    DY +  FQEPG
Sbjct:  248 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQL-YFQEPG 391          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: HYES_PIG (Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  229 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG 666
            G+ +H   +G+GPAV   HGFPE W+SWR Q+  L+  G+R +A D++GYG++ APP +  Y+                  Q   +GHDWG ++ W   LF P+RV+A+ +++ PF P NP V P+   +A    DY +  FQEPG
Sbjct:  247 GVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQL-YFQEPG 391          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: HYES_RAT (Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  229 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG 666
            GI +H   +G+GPA+   HGFPE W+SWR Q+  L+  G+R +A D++GYGD+ +PP +  Y                   Q   +GHDW  ++ W   LF P+RV+A+ +++ P  P NP V P+   R++   +Y +  FQEPG
Sbjct:  245 GIRLHFVEMGSGPAICLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCEEMVTFLNKLGIPQAVFIGHDWAGVLVWNMALFHPERVRAVASLNTPLMPPNPEVSPMEVIRSIPVFNYQL-YFQEPG 389          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: HYES_MOUSE (Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  229 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG 666
            GI +H   +G+GPA+   HGFPE W+SWR Q+  L+  G+R +A D++GYGD+ +PP +  Y                   Q   +GHDW  ++ W   LF P+RV+A+ +++ PF P +P V P+   R++   +Y +  FQEPG
Sbjct:  245 GIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMKVIRSIPVFNYQL-YFQEPG 389          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: YFHM_BACSU (AB hydrolase superfamily protein yfhM OS=Bacillus subtilis GN=yfhM PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  193 MEKIEHTTVATNGINMHVASIGT--GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEP 663
            M+ ++   V TNGI +HVA+ G   GP ++ +HGFPE WY W+NQ+  L   GYR IAPD RGY  +D P  + SY                   +  ++GHDWG  +AW+    RP+ ++ L+ +++P P     V PL  +   +    YI  FQ P
Sbjct:    1 MDGVKCQFVNTNGITLHVAAAGREDGPLIVLLHGFPEFWYGWKNQIKPLVDAGYRVIAPDQRGYNLSDKPEGIDSYRIDTLRDDIIGLITQFTDEKAIVIGHDWGGAVAWHLASTRPEYLEKLIAINIPHPHVMKTVTPL--YPPQWLKSSYIAYFQLP 157          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: EPHX3_HUMAN (Epoxide hydrolase 3 OS=Homo sapiens GN=EPHX3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  223 TNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 567
            ++G+ +H  S G   GP +LF+HGFPE W+SWR QL    SR +  +A DLRGYG +DAP  V  YT                  +  LV HDWGAL+AW+F ++ P  V+ +V +S
Sbjct:   82 SSGLRLHYVSAGRGNGPLMLFLHGFPENWFSWRYQLREFQSR-FHVVAVDLRGYGPSDAPRDVDCYTIDLLLVDIKDVILGLGYSKCILVAHDWGALLAWHFSIYYPSLVERMVVVS 197          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: EPHX4_MOUSE (Epoxide hydrolase 4 OS=Mus musculus GN=Ephx4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 54/160 (33.75%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  208 HTTVATNGINMHVASIGTG--PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP-------RNPAVRPLNNFRAVYGDDYYICRFQE 660
            +  +  +G+  H  + G    P +L +HGFPE WYSWR+QL    S  YR +A DLRGYG++DAP    SY                   +  L+GHDWG +IAW   +  P+ +  L+ ++ P P        R+PA      FR+ +   + I RF E
Sbjct:   71 YVRIKDSGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRHQLREFKSE-YRVVALDLRGYGESDAPAHQESYKLDCLIADIKDILDSLGYSKCVLIGHDWGGMIAWLIAVCYPEMIMKLIVINFPHPSVFTEYILRHPA----QLFRSSFYYFFQIPRFPE 225          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: EPHX4_HUMAN (Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  208 HTTVATNGINMHVASIGTG--PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 579
            +  +  +G+  H  + G    P +L +HGFPE WYSWR QL    S  YR +A DLRGYG+TDAP    +Y                   +  L+GHDWG +IAW   +  P+ V  L+ ++ P P
Sbjct:   73 YVRIKDSGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRYQLREFKSE-YRVVALDLRGYGETDAPIHRQNYKLDCLITDIKDILDSLGYSKCVLIGHDWGGMIAWLIAICYPEMVMKLIVINFPHP 197          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: EPHX3_XENTR (Epoxide hydrolase 3 OS=Xenopus tropicalis GN=ephx3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  226 NGINMHVASIGT--GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 579
            +GI  H  + G    P +L +HGFPE WYSWR QL   S+ GYR +A DLRG+G +DAP  +  Y                   +  LVGHDWG  +AW F +   D V  L+ M+ P P
Sbjct:   83 SGIRFHYVASGDKRNPLMLLLHGFPENWYSWRYQLDEFSN-GYRTVAIDLRGFGGSDAPSRLEDYKMEILLQDLQDLIRGLGYSRCVLVGHDWGGTLAWTFAVRHRDMVTHLIVMNAPHP 201          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: EPHX3_MOUSE (Epoxide hydrolase 3 OS=Mus musculus GN=Ephx3 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  217 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 573
            V ++G+ +H  S G   GP +LF+HGFPE W+SWR QL    S  +  +A D+RGY  +DAP  V  YT                  +  LV HDWGA +AW F ++ P  V+ +V  + P
Sbjct:   87 VKSSGLRLHYVSAGHGNGPLMLFLHGFPENWFSWRYQLREFQSH-FHVVAVDMRGYSPSDAPKEVDCYTIDLLLDDIKDTILGLGYSKCILVSHDWGASLAWEFSIYYPSLVERMVVANGP 206          
The following BLAST results are available for this feature:
BLAST of FC932533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HYES_HUMAN9.757e-3140.69Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 ... [more]
HYES_PIG3.139e-2939.04Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV... [more]
HYES_RAT5.919e-2836.99Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 ... [more]
HYES_MOUSE2.249e-2736.99Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 ... [more]
YFHM_BACSU1.045e-2435.85AB hydrolase superfamily protein yfhM OS=Bacillus ... [more]
EPHX3_HUMAN5.933e-2041.88Epoxide hydrolase 3 OS=Homo sapiens GN=EPHX3 PE=2 ... [more]
EPHX4_MOUSE1.461e-1833.75Epoxide hydrolase 4 OS=Mus musculus GN=Ephx4 PE=2 ... [more]
EPHX4_HUMAN5.553e-1836.51Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 ... [more]
EPHX3_XENTR9.472e-1840.00Epoxide hydrolase 3 OS=Xenopus tropicalis GN=ephx3... [more]
EPHX3_MOUSE1.237e-1738.02Epoxide hydrolase 3 OS=Mus musculus GN=Ephx3 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34209F04EF PostHarveN Citrus clementina cDNA clone C34209F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932533 ID=FC932533; Name=FC932533; organism=Citrus clementina; type=EST; length=707bp
GATGCATGCTCATTTAGTCGGATGACATTTGTCCGTCCTATTCTTCTTAT
CCATTTGATATTTAGCTCAATCATCAACCGGGAGTCCGGCAGGAGCCGTC
CTGTTTCACGTTCCTTTCATTCAACTTAAACAGAGCCTAATCCTGAAACC
TTCAGATTTCAGAGTTGCACCAAAAGGAAAAACAAACAAACAATGGAGAA
AATAGAGCACACAACAGTAGCCACTAACGGCATAAACATGCACGTGGCAT
CAATAGGGACAGGCCCAGCAGTTCTCTTCATTCACGGCTTCCCTGAACTC
TGGTATTCCTGGCGCAACCAGCTCCTCTATCTCTCTTCCCGCGGCTACCG
TGCCATTGCCCCAGACCTTCGTGGATACGGCGACACCGACGCCCCACCCT
CGGTCACGTCGTACACGGCACTCCATCTTGTCGGTGACCTCATCGGCCTC
CTTGATAAATTGGGTATCCATCAAGTTTTCCTAGTGGGTCATGACTGGGG
TGCTTTGATTGCTTGGTATTTTTGTTTGTTTAGGCCGGACAGAGTCAAGG
CCTTAGTCAACATGAGCGTCCCCTTTCCTCCCAGAAACCCGGCTGTGAGA
CCTCTTAATAACTTCAGGGCTGTCTATGGTGATGATTATTATATCTGCAG
ATTTCAGGAACCTGGAGAGATTGAAGAGAGTTTGCTCAGATTGATACTGC
NAGACTT
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