FC932538

Overview
NameFC932538
Unique NameFC932538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932538_ssr451 microsatellite FC932538_ssr451:451..462. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8223 contig Ccv1_Contig8223:85..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: GSOX3_ARATH (Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.692e-65
Identity = 108/208 (51.92%), Postives = 157/208 (75.48%), Query Frame = 2
Query:   80 ELLREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKGT*PDLXKKSHCIS 703
            EL REGH+VV++E+ +QVGG W+YT +++SDPL +DP R  VHSS+Y+SLR N+PRE MG + +PF+ R  + S D RRYP H EVL Y+Q+FAREF +++++R  TEV+    V++  W+V+S+     +E+E +DAVVVCNGH++ P +A +PGI SWPGKQ+HSHNYR+P+PF+++VV++IG++ASG DI      + K+ H  S
Sbjct:   28 ELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVHSSIYESLRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREFKIEEMIRFETEVVRVEPVDNGNWRVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAKEVHIAS 235          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: GSOX4_ARATH (Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.041e-64
Identity = 114/208 (54.81%), Postives = 154/208 (74.04%), Query Frame = 2
Query:   80 ELLREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKGT*PDLXKKSHCIS 703
            EL REGHTVV+ ++ +QVGG W+YT ETESD LG+DP R  VHSS+YKSLR NLPRE MG++ +PFV R  + S D RRYP H EVL YLQ+FA EF +++++R  TEVL    V + KW+V+S+       +E +DAVV+C GHF+ P +AQ+PGI+SWPG+Q HSH+YR+P+PF+D+VV++IG++ASG DI      + K+ H  S
Sbjct:   28 ELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVHSSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMIRFETEVLRVEPV-NGKWRVQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGRQTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIAS 234          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: GSOX5_ARATH (Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.972e-64
Identity = 117/209 (55.98%), Postives = 154/209 (73.68%), Query Frame = 2
Query:   80 ELLREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKGT*PDLXKKSHCIS 703
            EL RE HTVV++E+  +VGG W+YT  +E DPL +DPNR  VHSS+Y SLR NLPRE MG++ +PFV R  +  S D RRYP H EVL YL++FAREF + ++VR  TEV+     E  KW+V+S+  D + ++E FDAVVVCNGH++ PR+A VPGIDSWPGKQ+HSHNYR+P+ F+DQVV++IG++ASG DI      + K+ H  S
Sbjct:   28 ELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHSSVYDSLRTNLPRECMGYRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMVRFKTEVVLVE-PEDKKWRVQSKNSDGISKDEIFDAVVVCNGHYTEPRVAHVPGIDSWPGKQIHSHNYRVPDQFKDQVVVVIGNFASGADISRDITGVAKEVHIAS 235          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: GSOX2_ARATH (Flavin-containing monooxygenase FMO GS-OX2 OS=Arabidopsis thaliana GN=FMOGS-OX2 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.278e-62
Identity = 116/229 (50.66%), Postives = 155/229 (67.69%), Query Frame = 2
Query:   17 PLMFRHXXXXXXXXXXXXXXHELLREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKGT*PDLXKKSHCIS 703
            P+  +H               EL REGHTVV+ E+ ++VGG WIY+ + ESDPL +DP R  VHSS+Y+SLR NLPRE MGF  +PFV R  + S D RRYP H EVL YLQ+FAREF ++++VR   EV+    V + KW+V S+    V  +E FDAVVVC+GH++ P +A +PGI SWPGKQ+HSHNYR+P PF+++VV++IG++ASG DI      + K+ H  S
Sbjct:    7 PISSQHVVVIGAGAAGLVAARELSREGHTVVVLEREKEVGGLWIYSPKAESDPLSLDPTRSIVHSSVYESLRTNLPRECMGFTDFPFVPRFDDESRDSRRYPSHMEVLAYLQDFAREFNLEEMVRFEIEVVRVEPV-NGKWRVWSKTSGGVSHDEIFDAVVVCSGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPGPFENEVVVVIGNFASGADISRDIAKVAKEVHIAS 234          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: GSOX1_ARATH (Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.847e-62
Identity = 113/208 (54.33%), Postives = 150/208 (72.12%), Query Frame = 2
Query:   80 ELLREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKGT*PDLXKKSHCIS 703
            EL REGHTVV++++ +QVGG W Y+S+ +SDPL +D  R  VH+S+Y+SLR NLPRE MGF  +PFV R ++ S D RRYP H EVL YLQ+FAREF ++++VR  TEV+    V + KW V+S+        E FDAVVVC+GHF+ P +A +PGI SWPGKQ+HSHNYR+P PF ++VV++IG+YASG DI      + K+ H  S
Sbjct:   28 ELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVHTSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVCVEPV-NGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGKQIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIAS 234          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO5_RAT (Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Rattus norvegicus GN=Fmo5 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 59/197 (29.95%), Postives = 98/197 (49.75%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG   V +E+ + +GG W Y    E              +S+YKS+ +N  +E+M F  YP +  +Y        +  + +VL Y + +A+EFG+ + ++  T V + +       S +W+V + + +   + + FD V+VC GH + P L     PGI+ + GK  HS  Y+ P  F  + VI+IG   SG D+
Sbjct:   23 LEEGLEPVCFERSDDIGGLWRYQENPEKG-----------RASIYKSVIINTSKEMMCFSDYP-IPDHYPN------FMHNSQVLEYFRMYAKEFGLLKYIQFKTTVCSVKKQPDFSTSGQWQVVT-EHEGKQQVDVFDGVLVCTGHHTDPHLPLDSFPGIEKFKGKYFHSREYKNPVEFTGKRVIVIGIGNSGGDL 200          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO5_CAVPO (Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Cavia porcellus GN=FMO5 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 57/197 (28.93%), Postives = 97/197 (49.24%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG   V +E+   +GG W +    E              +S+YKS+ +N  +E+M F  YP +  +Y        +  +  VL Y + +A+EFG+ + ++  T V N +       S +W+V + + +   + + FDAV+VC GH +   L     PGI+ + G+  HS +Y+ P  F  + V++IG   SG D+
Sbjct:   23 LEEGLEPVCFERSADIGGLWRFQENPEEG-----------RASIYKSVIINTSKEMMCFSDYP-IPDHYPN------FMHNSHVLEYFRMYAKEFGLLKYIQFKTTVCNVKKRPDFSTSGQWEVVT-EHEGKTKVDVFDAVMVCTGHHTNAHLPLESFPGIEKFKGQYFHSRDYKNPEAFTGKRVVIIGIGNSGGDL 200          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO6_HUMAN (Putative dimethylaniline monooxygenase [N-oxide-forming] 6 OS=Homo sapiens GN=FMO6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 56/197 (28.43%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG     +E+ + VGG W ++  TE              +S+Y+S+  N  +E+M F  +P+         D   Y  H ++  Y++ +A++  + + ++  T V   +   S     +W V + +KD   E   FDAV++C+GH   P L     PG+D + G  +HS +Y+ P  F+ + V++IG   SG DI
Sbjct:   22 LEEGLEPTCFERSDDVGGLWKFSDHTEEG-----------RASIYQSVFTNSSKEMMCFPDFPYPD-------DYPNYIHHSKLQEYIKTYAQKKDLLRYIQFETLVSGIKKCPSFLVTGQWVVVT-EKDGKQESTIFDAVMICSGHHVYPNLPTDSFPGLDQFRGNYLHSRDYKNPEAFKGKRVLVIGLGNSGSDI 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO2_PONAB (Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Pongo abelii GN=FMO2 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 54/195 (27.69%), Postives = 94/195 (48.21%), Query Frame = 2
Query:   92 EGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR--LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            EG     +E+ E +GG W +    E              +S+Y+S+  N  +E+  F  +P          D   +  + ++L Y + FA++F + + ++  T VL+ R       S +WKV ++      +   FDAV+VC+GH  +P   L   PGI+ + G+  HS  Y+ P+ F+ + +++IG   SG DI
Sbjct:   24 EGLEPTCFERTEDIGGVWRFKENVEDG-----------RASIYQSVVTNTSKEMSCFSDFPMPE-------DFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVRKCPDFSSSGQWKVVTQSNSKE-QSAVFDAVMVCSGHHILPHIPLKSFPGIERFKGQYFHSRQYKHPDGFEGKRILVIGMGNSGSDI 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO2_PANTR (Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Pan troglodytes GN=FMO2 PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 54/195 (27.69%), Postives = 94/195 (48.21%), Query Frame = 2
Query:   92 EGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR--LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            EG     +E+ E +GG W +    E              +S+Y+S+  N  +E+  F  +P          D   +  + ++L Y + FA++F + + ++  T VL+ R       S +WKV ++      +   FDAV+VC+GH  +P   L   PGI+ + G+  HS  Y+ P+ F+ + +++IG   SG DI
Sbjct:   24 EGLEPTCFERTEDIGGVWRFKENVEDG-----------RASIYQSVITNTSKEMSCFSDFPMPE-------DFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVRKCPDFSSSGQWKVVTQSNGKE-QSAVFDAVMVCSGHHILPHIPLKSFPGIERFKGQYFHSRQYKHPDGFEGKRILVIGMGNSGSDI 199          
The following BLAST results are available for this feature:
BLAST of FC932538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
GSOX3_ARATH4.692e-6551.92Flavin-containing monooxygenase FMO GS-OX3 OS=Arab... [more]
GSOX4_ARATH3.041e-6454.81Flavin-containing monooxygenase FMO GS-OX4 OS=Arab... [more]
GSOX5_ARATH3.972e-6455.98Flavin-containing monooxygenase FMO GS-OX5 OS=Arab... [more]
GSOX2_ARATH1.278e-6250.66Flavin-containing monooxygenase FMO GS-OX2 OS=Arab... [more]
GSOX1_ARATH2.847e-6254.33Flavin-containing monooxygenase FMO GS-OX1 OS=Arab... [more]
FMO5_RAT1.252e-1729.95Dimethylaniline monooxygenase [N-oxide-forming] 5 ... [more]
FMO5_CAVPO8.116e-1728.93Dimethylaniline monooxygenase [N-oxide-forming] 5 ... [more]
FMO6_HUMAN2.361e-1628.43Putative dimethylaniline monooxygenase [N-oxide-fo... [more]
FMO2_PONAB4.028e-1627.69Dimethylaniline monooxygenase [N-oxide-forming] 2 ... [more]
FMO2_PANTR5.261e-1627.69Dimethylaniline monooxygenase [N-oxide-forming] 2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34209F09EF PostHarveN Citrus clementina cDNA clone C34209F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932538 ID=FC932538; Name=FC932538; organism=Citrus clementina; type=EST; length=716bp
GAAAGAAACGGCACCTCCACTTATGTTTCGCCATGTGGCAGTGATCGGCG
CCGGCGCCGCTGGACTGGTGGTGGGTCATGAGTTGCTGAGGGAAGGCCAC
ACGGTGGTGATTTACGAGAAAGGAGAGCAAGTGGGTGGCTCTTGGATTTA
CACTTCGGAGACGGAGTCAGACCCGCTTGGTGTCGACCCAAATCGTTACC
CGGTTCATTCGAGCCTCTACAAGTCTCTCAGGGTCAATCTTCCCAGGGAG
TTGATGGGATTTCAAGCTTACCCGTTTGTGGCCCGTAATTATGAAGGGTC
CGTTGACCTGAGAAGGTATCCGGGTCATGAGGAGGTGTTGCGTTATTTAC
AAAATTTTGCCAGAGAGTTTGGTGTCGATCAAGTGGTGAGGCTTCATACT
GAGGTGTTGAATGCACGTTTGGTTGAGAGCAACAAATGGAAAGTTAAGTC
AAGAAAGAAAGATGATGTTGTTGAAGAGGAAACTTTTGATGCTGTGGTCG
TTTGCAATGGGCATTTTTCAGTGCCTCGTCTTGCTCAAGTTCCTGGCATT
GATTCATGGCCAGGGAAGCAAATGCATTCACATAATTATCGGATTCCCAA
TCCATTCCAAGATCAAGTAGTGATTCTGATAGGGCATTACGCTAGTGGAT
TGGATATAAAAGGGACTTAGCCGGATTTGNCAAAGAAGTCACATTGCATC
TCGATCGGTTGCAGAT
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