FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15529 contig Ccv1_Contig15529:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 3.665e-99
Identity = 166/218 (76.15%), Postives = 195/218 (89.45%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RGVVK+I+HDAGRGAPLAKV FR PYK+K+  ETFIANEG++TGQFIYAGKNA+L VGNILPL S+PEGT+++NVEE+ GDRGAL RTSGNYV VIGHNP++ KTR++LPSGAKK++ + ARG++G++AGGGR DKPLLKAGRA HK+ VKRNSWPKTRGVAMNPVDHPHGGG HQH
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 9.027e-98
Identity = 164/218 (75.23%), Postives = 193/218 (88.53%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RGVVK+I+HDAGRGAPLAKV FR PYK+K+  E FIANEG++TGQFIYAGK A+L VGN+LPL S+PEGT+++NVEEK GDRGAL R SGNYV +IGHNP++ KTRV+LPSGAKK+I + ARG++G++AGGGRTDKPLLKAGRA HK+ +KRNSWPKTRGVAMNPVDHPHGGG HQH
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 352.058 bits (902), Expect = 1.703e-96
Identity = 161/218 (73.85%), Postives = 192/218 (88.07%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RG+VK+I+HD+GRGAPLAKV FR PYK+++  E FIANEG++TGQFIYAGK A+L VGN+LPL S+PEGT+++NVEEK GDRGAL R SGNYV +IGHNP++ KTRV+LPSGAKKVI + ARG++G++AGGGR DKPLLKAGRA HK+ +KRNSWPKTRGVAMNPVDHPHGGG HQH
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.220e-94
Identity = 165/218 (75.69%), Postives = 188/218 (86.24%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRK  G IF A+TRL K  AQ RTLDFAE HGY RGVV++IIHD GRGAPLAKV FR+PY ++   ETF+A EGMYTGQF+Y GKNAALTVGN+LP+  MPEGT+I+NVEEKAGDRGALGR+SGNYV ++GH+ + GKTRVKLPSGAKKV+ ++ARG+VGIVAGGGR DKPLLKAGRA HK+ VKRN WP+TRGVAMNPVDHPHGGG HQH
Sbjct:    1 MGRVIRAQRKS-GGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQH 217          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 7.170e-87
Identity = 149/218 (68.35%), Postives = 176/218 (80.73%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F ++T+  K   + R+LD+AE HGY +GVVK+IIHD GRGAPLA V FR PYKFK   E FIA EG+YTGQF+Y GK A L VGN++P+ +MPEGT++ N+EEK GDRG L R SGN+ TVIGHNP+  +TRVKLPSGAKKV+ ++ RGMVGIVAGGGR DKP+LKAGRA HK+ VKRN WP  RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 7.170e-87
Identity = 149/218 (68.35%), Postives = 176/218 (80.73%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F ++T+  K   + R+LD+AE HGY +GVVK+IIHD GRGAPLA V FR PYKFK   E FIA EG+YTGQF+Y GK A L VGN++P+ +MPEGT++ N+EEK GDRG L R SGN+ TVIGHNP+  +TRVKLPSGAKKV+ ++ RGMVGIVAGGGR DKP+LKAGRA HK+ VKRN WP  RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.364e-87
Identity = 151/218 (69.27%), Postives = 175/218 (80.28%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R+LDFAE  GY RGVVK+IIHD GRGAPLA V FR PY++K+  E FIA EGM+TGQF+Y G+ A L +GN++PL+ MPEGT+I N+EEK GDRG L RTSGNY TVI HN +  KTRVKLPSGAKKV+ +  R MVGIVAGGGR DKP+LKAGRA HK+ VKRNSWPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 6.069e-86
Identity = 146/218 (66.97%), Postives = 174/218 (79.82%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+T+  K   + R LD+AE HGY +GVVK+IIHD GRGAPLA V FR PY+F++  + FIA EGMYTGQF+Y G+ A L +GN+LP+  MPEGT++ N+EEK GDRG L RTSGNY +VI HNP+  +TRVKLPSGAKKV+ +  R M+GIVAGGGR DKP+LKAGRA HK+ VKRN WPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.069e-86
Identity = 148/218 (67.89%), Postives = 172/218 (78.90%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+FTA+T+  K   + R LD+AE HGY +G VK+IIHD GRGAPLA V FR PYKF +  + FIA EGMYTGQF+Y GK A L +GN+LP+  MPEGT++ N+EEK GDRG L RTSGNY +VI HNP+  +TRVKLPSGAKKV+ +  R MVGIVAGGGR DKP+LKAGRA  K+ VKRN WPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.306e-85
Identity = 144/218 (66.06%), Postives = 172/218 (78.90%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F ++T   K PA+FRTLDF E +GY +GV+ E+IHD GRGAPLA+V FRHP+++K   E F+A EGMYTGQF+Y GK A L VGN+LPL S+PEG V+ NVE K GDRG   R SG+Y  VI HNP++G TRVKLPSGAKK++ +  R M+G VAGGGRT+KP+LKAG A HK+ VKRN WPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ASHGO3.665e-9976.1560S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_CANGA9.027e-9875.2360S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST1.703e-9673.8560S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_SCHPO1.220e-9475.6960S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_SPOFR7.170e-8768.3560S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR7.170e-8768.3560S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_DROME9.364e-8769.2760S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_ANOGA6.069e-8666.9760S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL6.069e-8667.8960S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_SOLLC2.306e-8566.0660S ribosomal protein L8 OS=Solanum lycopersicum G... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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