FC932540

Overview
NameFC932540
Unique NameFC932540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932540_ssr205 microsatellite FC932540_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12229 contig Ccv1_Contig12229:46..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.826e-44
Identity = 92/147 (62.59%), Postives = 110/147 (74.83%), Query Frame = 3
Query:  231 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            KP +L+ EKLG+AG++LL EF +VDC+Y+LSPE+L  K++  DALIVRSGTKV R+VFE++ GRLKVVGRAGVGIDNVDL AATE GCL                        RNVAQADAS+KAGKW+R+KYVGVSLVG TLAV+G
Sbjct:   82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMG 228          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 60/144 (41.67%), Postives = 82/144 (56.94%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            +L+ + L +  + +L E   V+ A  L+ EEL  KI   D L+VRSGTKV RDV E  A +LKV+GRAGVG+DN+D+ AATE G +                        RN+ QA AS+K G+W R ++ G+ L G TL V+G
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIE-KAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIG 146          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 59/144 (40.97%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            VLIA+ + + G+  L E A V     ++PEEL   I   DA++VRS TKV R+V E +A RLK++ RAGVG+DNVD+ AAT+ G +                        R +A AD SVK GKW++N+++G+ L G TL ++G
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIE-AAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIG 148          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 54/119 (45.38%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L G TL +LG
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 54/119 (45.38%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L G TL +LG
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 54/119 (45.38%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L G TL +LG
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 54/119 (45.38%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L G TL +LG
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            VL+AE + +  +D + +    V+    +S EEL  ++   +A++VRS TKV+ +V ++ A  LK++GRAGVG+DN+D+ AAT+ G +                        R + QAD SVK GKW+R K++G+ L G T  V+G
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-AKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKTAGVIG 146          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18
Identity = 54/119 (45.38%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L G TL +LG
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILG 152          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18
Identity = 54/119 (45.38%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L G TL +LG
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILG 152          
The following BLAST results are available for this feature:
BLAST of FC932540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SERA_ARATH1.826e-4462.59D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA1.042e-2341.67D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH1.152e-2240.97D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_PONAB5.915e-1945.38D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_PANTR5.915e-1945.38D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_MACFA5.915e-1945.38D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_HUMAN5.915e-1945.38D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_ARCFU7.725e-1935.86D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_RAT1.009e-1845.38D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
SERA_MOUSE1.009e-1845.38D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209F11EF PostHarveN Citrus clementina cDNA clone C34209F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932540 ID=FC932540; Name=FC932540; organism=Citrus clementina; type=EST; length=673bp
GGCTCTCGCTCCACTGCACTCCCTCTCCCCATACGACGCCGCTTTAACCA
CCCCGAAAAATGGCCACGTCAGCAGCCTCCTGCGCTGCCTCCCTCCGTCA
GCCTTCCCTCAAGCTATCACTGTCTTCCAAACACTCTCTTTCCCCTCTAT
TCTCCGTCTCCTTCAACCACAAGCGGGCCCCGCCGCGGCTCGTAATAATC
GCATCCGCCGCCGCCGACGGCATCTCCTCAAAACCGACCGTTTTGATCGC
CGAGAAGCTCGGACAGGCCGGCTTGGATCTTCTCAACGAGTTCGCCAACG
TGGACTGCGCATACAACTTGTCGCCAGAGGAGCTCTGCACGAAGATCTCG
CTCTGCGACGCGCTGATCGTGCGCAGCGGCACAAAGGTCAATCGCGACGT
GTTCGAGTCGTCAGCTGGAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTG
GTATTGATAATGTGGATCTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTT
GTGAACGCGCCGACGGCGAATACCGTTGCGGCTGCTGAGCATGGGATCGC
GCTTTTGGCTGCCATGGCTAGAAATGTCGCCCAGGCTGATGCCTCTGTTA
AGGCTGGAAAGTGGCAAAGGAACAAATATGTGGGTGTCTCCCTTGTGGGN
TAAACACTTGCTGTATTGGGATT
back to top