FC932542

Overview
NameFC932542
Unique NameFC932542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:74..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.567e-75
Identity = 132/168 (78.57%), Postives = 147/168 (87.50%), Query Frame = 2
Query:  182 LLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +L +E H SLFK+KF K YAS EEHD RF++FKANLRRA R QKLDPSATHGVTQFSDLT +EFR+ +LG+R   +LPKDA++APILPT +LP DFDWR+ GAV PVK+QGSCGSCWSFS TGALEGANFLATGKLVSLSEQQLVDCDHECDPEE  SCDSGCNGGLM
Sbjct:   44 VLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLM 211          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.770e-74
Identity = 135/189 (71.43%), Postives = 155/189 (82.01%), Query Frame = 2
Query:  128 VTDCGDE---ILSHHESTNNDLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            V+ CGDE   I    + T   +L +E H +LFKKKF K Y S EEH  RF++FKANL RA R QK+DPSA HGVTQFSDLT +EFRR +LG++   +LPKDA+QAPILPT +LP +FDWR++GAV PVK+QGSCGSCWSFSTTGALEGA+FLATGKLVSLSEQQLVDCDHECDPEE GSCDSGCNGGLM
Sbjct:   20 VSVCGDEDVLIRQVVDETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLM 208          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.403e-71
Identity = 123/174 (70.69%), Postives = 148/174 (85.06%), Query Frame = 2
Query:  164 ESTNNDLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            ++  + LL AEHH + FK KF+K+YA++EEHD RF +FK+NL +A   Q  DP+A HG+T+FSDLT +EFRR +LGL+++LRLP  A +APILPT +LP DFDWREKGAV PVKDQGSCGSCW+FSTTGALEGA++LATGKLVSLSEQQLVDCDH CDPE+ GSCDSGCNGGLM
Sbjct:   35 DNEEDHLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLM 208          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.026e-66
Identity = 128/202 (63.37%), Postives = 147/202 (72.77%), Query Frame = 2
Query:   98 IDDVDQLISQVTDCGDEILSHHESTNNDL-LGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLR-----LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +D  D LI QV   GD+         NDL L AE H   F ++F K+Y   +EH  R ++FK NLRRA R Q LDPSA HGVT+FSDLTPAEFRRTYLGLR+  R     L + A +AP+LPT+ LP DFDWR+ GAVGPVK+QGSCGSCWSFS +GALEGA++LATGKL  LSEQQ VDCDHECD  EP SCDSGCNGGLM
Sbjct:   21 VDAEDPLIRQVVPGGDD---------NDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLM 213          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.050e-34
Identity = 84/167 (50.30%), Postives = 103/167 (61.68%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRA------ARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPT---NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC-DPEEPGSCDSGCNGGL 682
            F+ KFNK Y S EE+  RF IFK+NL +       A   K D     GV +F+DL+  EF+  YL  +  +    D   A  L     N +P  FDWR +GAV PVK+QG CGSCWSFSTTG +EG +F++  KLVSLSEQ LVDCDHEC + E   +CD GCNGGL
Sbjct:   32 FQDKFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTK--FGVNKFADLSSDEFKNYYLNNKEAI-FTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGL 194          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 2
Query:  251 EHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQAPILPTN--DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            + D+RF IFK NLR      + + +AT+  G+T+F+DLT  E+R+ YLG R    R++   K+ +Q      N  ++P   DWR+KGAV P+KDQG+CGSCW+FSTT A+EG N + TG+L+SLSEQ+LVDCD         S + GCNGGLM
Sbjct:   69 DQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDK--------SYNQGCNGGLM 213          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 81/177 (45.76%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  170 TNNDLLGAEHHLSLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            TN D L     L LF+    + +KAY S EE   RF +F+ NL    +R     S   G+ +F+DLT  EF+  YLGL +     K    A        DLP   DWR+KGAV PVKDQG CGSCW+FST  A+EG N + TG L SLSEQ+L+DCD         + +SGCNGGLM
Sbjct:   42 TNTDKL-----LELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCD--------TTFNSGCNGGLM 205          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 72/163 (44.17%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +K +  K+Y +  E +RR+  F+ NLR          +  H    G+ +F+DLT  E+R TYLGLR K R  +      +   N+ LP   DWR KGAV  +KDQG CGSCW+FS   A+EG N + TG L+SLSEQ+LVDCD         S + GCNGGLM
Sbjct:   43 WKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCD--------TSYNEGCNGGLM 197          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 79/161 (49.07%), Postives = 97/161 (60.25%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQK-LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            FK K+ K Y   E+ + RF IFK+N+ +A   Q  +  SA +GVT +SDLT  EF RT+L       +P      P       N++P +FDWREKGAV  VK+QG CGSCW+FSTTG +E   F  TGKL+SLSEQQLVDCD           D GCNGGL
Sbjct:   23 FKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHL--TASWVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGL 171          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 77/159 (48.43%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  221 KFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL---PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            KFN+ Y+S E    R++IFK+N+        K D     G+  F+D+T  E+R+TYLG R         D   +L   DL   P   DWR K AV P+KDQG CGSCWSFSTTG+ EGA+ L T KLVSLSEQ LVDC     PEE    + GC+GGLM
Sbjct:   42 KFNRQYSSSE-FSNRYSIFKSNMDYVDNWNSKGDSQTVLGLNNFADITNEEYRKTYLGTRVNAHSYNGYDGREVLNVEDLQTNPKSIDWRTKNAVTPIKDQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDCS---GPEE----NFGCDGGLM 192          
The following BLAST results are available for this feature:
BLAST of FC932542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
RD19A_ARATH3.567e-7578.57Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH1.770e-7471.43Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP_PEA1.403e-7170.69Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP1_MAIZE3.026e-6663.37Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI1.050e-3450.30Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
GCP1_ARATH1.676e-3248.37Germination-specific cysteine protease 1 OS=Arabid... [more]
XCP1_ARATH2.420e-3145.76Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
ORYA_ORYSJ4.128e-3144.17Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CATL_SCHMA5.392e-3149.07Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CYSP2_DICDI7.042e-3148.43Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC34209G01EF PostHarveN Citrus clementina cDNA clone C34209G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932542 ID=FC932542; Name=FC932542; organism=Citrus clementina; type=EST; length=685bp
GATTGATATCAGCATTGTCTAAAACATGGGATCTAAAACAGTAGTTTTCT
TTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATC
GACGATGTTGATCAGCTGATCAGTCAAGTAACGGACTGCGGTGACGAGAT
CCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACC
ACCTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAG
GAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGC
GCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCT
CCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGG
AAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAA
TGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTG
TTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGG
GCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAG
TGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAG
GTTCTTGTGATTCTGGATGCAATGGTGGGCTTATG
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