FC932543

Overview
NameFC932543
Unique NameFC932543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9338 contig Ccv1_Contig9338:678..1369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 397.127 bits (1019), Expect = 4.537e-110
Identity = 187/224 (83.48%), Postives = 203/224 (90.62%), Query Frame = 3
Query:   12 ISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKENSKFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQTLLKPL 683
            I Q+VKAVE++MQTF HREKKK PSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLS GGTPPKFLIIDDGWQQIENK K+E NC+VQEGAQFA+RL GIKEN+KFQK  Q   QVSGLK VVD +KQ HNVK VY WHALAGYWGGVKPAA GMEHYD+ALAYPV SPGV+GNQPDIVMDSLAVHGLGLV+PKKVFNFYNELH+YLASCG+DGVKVDVQ +++ L
Sbjct:  171 IRQSVKAVERHMQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIIDDGWQQIENKEKDE-NCVVQEGAQFATRLVGIKENAKFQKSDQKDTQVSGLKSVVDNAKQRHNVKQVYAWHALAGYWGGVKPAASGMEHYDSALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVNPKKVFNFYNELHSYLASCGIDGVKVDVQNIIETL 393          
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.084e-75
Identity = 133/229 (58.08%), Postives = 175/229 (76.42%), Query Frame = 3
Query:   12 ISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIE-NKPKEESNCIVQEGAQFASRLTGIKENSKFQKKCQNSEQVS----GLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQTLLKPL 683
            I++AVKAVE+++QTF+HRE+KK P  L+WFGWCTWDAFYT+VTA+ V +GL+SL AGG  PKF+IIDDGWQ +  ++   E N      A FA+RLT IKEN KFQK  +   +V      L HV+ + K N+++KYVYVWHA+ GYWGGVKP   GMEHY++ +AYPV+SPGVM ++    ++S+  +GLGLV+P+KVF+FYN+LH+YLAS GVDGVKVDVQ +L+ L
Sbjct:  171 ITKAVKAVEQHLQTFSHRERKKMPDMLNWFGWCTWDAFYTNVTAKDVKQGLESLKAGGVTPKFVIIDDGWQSVGMDETSVEFNA--DNAANFANRLTHIKENHKFQKDGKEGHRVDDPSLSLGHVITDIKSNNSLKYVYVWHAITGYWGGVKPGVSGMEHYESKVAYPVSSPGVMSSENCGCLESITKNGLGLVNPEKVFSFYNDLHSYLASVGVDGVKVDVQNILETL 397          
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.996e-65
Identity = 121/227 (53.30%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    3 F*RISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKENSKFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQTLLKPL 683
            F  I+ A++ V+ ++ +F  R +KK P  +D+FGWCTWDAFY +VT EGV+ GLKSL+AGGTPPKF+IIDDGWQ +E     E+    +E   F  RLTGIKEN KF+KK    +   G+K++V  +K+ H +KYVYVWHA+ GYWGGV+P     E Y + + YP  S GV+ N P    D + + GLGLV PKKV+ FYNELH+YLA  GVDGVKVDVQ +L+ L
Sbjct:  174 FQTITDAIRTVKLHLNSFRQRHEKKLPGIVDYFGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPPKFVIIDDGWQSVERDATVEAGDEKKESPIF--RLTGIKENEKFKKK---DDPNVGIKNIVKIAKEKHGLKYVYVWHAITGYWGGVRPG----EEYGSVMKYPNMSKGVVENDPTWKTDVMTLQGLGLVSPKKVYKFYNELHSYLADAGVDGVKVDVQCVLETL 391          
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.392e-42
Identity = 95/231 (41.13%), Postives = 136/231 (58.87%), Query Frame = 3
Query:   12 ISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQI---ENKPKEESNCI--VQEGAQFASRLTGIKENSKFQ--KKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQTLLKPL 683
            + +AVK ++  + TF   E+K  PS ++ FGWCTWDAFY  V  +GV EG+K+L+ GG PP F+IIDDGWQ I   ++ P  E + +     G Q   RL   +EN KF+  +   N  +   +  V D  ++  +V+ VYVWHAL GYWGGV+P   GM   +  +  P  SPGV     D+ +D +  +G+GLV P      ++ +H++L S G+DGVKVDV  LL+ L
Sbjct:  206 VKEAVKVIQTKLGTFKTLEEKTPPSIIEKFGWCTWDAFYLKVHPKGVWEGVKALTDGGCPPGFVIIDDGWQSISHDDDDPVTERDGMNRTSAGEQMPCRLIKYEENYKFREYENGDNGGKKGLVGFVRDLKEEFRSVESVYVWHALCGYWGGVRPKVCGMP--EAKVVVPKLSPGVKMTMEDLAVDKIVENGVGLVPPNLAQEMFDGIHSHLESAGIDGVKVDVIHLLELL 434          
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.637e-41
Identity = 90/229 (39.30%), Postives = 125/229 (54.59%), Query Frame = 3
Query:   12 ISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIENKP---KEESNCIVQEGAQFASRLTGIKENSKFQKKCQNSEQVS-GLKHVVDESKQNHN-VKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQTLLKPL 683
            +  A+K +  +M TF   E+K  P  +D FGWCTWDAFY  V  +GV +G+K L  GG PP  ++IDDGWQ I +       E   I   G Q   RL   +EN KF+      +Q   G+K  V + K   + V Y+YVWHAL GYWGG++P A  +    + +  P  SPG+     D+ +D +   G+G   P     FY  LH++L + G+DGVKVDV  +L+ L
Sbjct:  195 VKDAMKVIRVHMNTFKLLEEKSPPGIVDKFGWCTWDAFYLTVNPDGVHKGVKCLVDGGCPPGLVLIDDGWQSIGHDSDGIDVEGMNITVAGEQMPCRLLKFEENHKFKDYVSPKDQNDVGMKAFVRDLKDEFSTVDYIYVWHALCGYWGGLRPEAPALP--PSTIIRPELSPGLKLTMEDLAVDKIIETGIGFASPDLAKEFYEGLHSHLQNAGIDGVKVDVIHILEML 421          
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.950e-40
Identity = 91/228 (39.91%), Postives = 126/228 (55.26%), Query Frame = 3
Query:   12 ISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIENKPKE-----ESNCIVQEGAQFASRLTGIKENSKFQKKCQNSEQVSGLKHVVDESKQNH-NVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQTLLK 677
            +  A++ V  ++ TF   E+K  P  +D FGWCTWDAFY  V  EGV EG++ L+ GG PP  ++IDDGWQ I +   +     E       G Q   RL   +EN KF+      E   G+   V E K     V+ VYVWHAL GYWGG++P A G+      +  P  SPG+     D+ +D +  +G+GLV P++    Y  LH++L + G+DGVKVDV  LL+
Sbjct:  198 VKDAMRVVRAHLGTFRLMEEKTPPPIVDKFGWCTWDAFYLKVHPEGVWEGVRRLADGGCPPGLVLIDDGWQSICHDDDDLGSGAEGMNRTSAGEQMPCRLIKFQENYKFR------EYKGGMGGFVREMKAAFPTVEQVYVWHALCGYWGGLRPGAPGLP--PAKVVAPRLSPGLQRTMEDLAVDKIVNNGVGLVDPRRARELYEGLHSHLQASGIDGVKVDVIHLLE 417          
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 82/295 (27.80%), Postives = 120/295 (40.68%), Query Frame = 3
Query:   12 ISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGV-------------------DEGLKSLSAGGTPP-------------------------KFLIIDDGWQQIENKPKEESNC---IVQEGAQFASRLTGIKENSKFQKKCQNSEQVSGLKHVV-----------------DESKQNHNVKY--------------VYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDV 662
            + +A  A+  ++ +F   E+K  P+ +D FGWCTWDAFY  V   G+                   D+G +S+S  G  P                         KF   + G     N P  + N    ++ +G +   +L   +E +   K    +E  S +K VV                  E K  + +K               VYVWHAL G WGGV+P      H DT +     SPG+ G   D+ +  ++   LGLVHP +    Y+ +H+YLA  G+ GVKVDV
Sbjct:  192 MKEAYSAIRVHLNSFRLLEEKTIPNLVDKFGWCTWDAFYLTVNPIGIFHGLDDFSKGGVEPRFVIIDDGWQSISFDGYDPNEDAKNLVLGGEQMSGRLHRFDECYKFRKYESGLLLGPNSPPYDPNNFTDLILKGIEH-EKLRKKREEAISSKSSDLAEIESKIKKVVKEIDDLFGGEQFSSGEKSEMKSEYGLKAFTKDLRTKFKGLDDVYVWHALCGAWGGVRPETT---HLDTKIVPCKLSPGLDGTMEDLAVVEISKASLGLVHPSQANELYDSMHSYLAESGITGVKVDV 482          
BLAST of FC932543 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3
Query:   12 ISQAVKAVEKYMQTFTHREKKKFPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIE---NKPKEESNCIVQEGAQFASRLTGIKENSKFQKKCQNSEQVSGLKH 368
            + +A  A+  +M TF   E+KK P  +D FGWCTWDA Y  V    +  G+K    GG  PKF+IIDDGWQ I    ++  +++  +V  G Q  +RLT  KE  KF+     S   S   H
Sbjct:  206 MKEAFSALRVHMNTFKLLEEKKLPKIVDKFGWCTWDACYLTVDPATIWTGVKEFEDGGVCPKFVIIDDGWQSINFDGDELDKDAENLVLGGEQMTARLTSFKECKKFRNYKGGSFITSDASH 327          

HSP 2 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 3
Query:  408 VYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQTLLKPL 683
            +YVWHAL G W GV+P  + M      +A    SP +     D+ +D +   G+GLVHP K   FY+ +H+YLAS GV G K+DV   L+ L
Sbjct:  416 IYVWHALCGAWNGVRP--ETMMDLKAKVAPFELSPSLGATMADLAVDKVVEAGIGLVHPSKAHEFYDSMHSYLASVGVTGAKIDVFQTLESL 505          
The following BLAST results are available for this feature:
BLAST of FC932543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS2_ARATH4.537e-11083.48Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH8.084e-7558.08Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH1.996e-6553.30Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA1.392e-4241.13Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS5_ARATH7.637e-4139.30Probable galactinol--sucrose galactosyltransferase... [more]
RFS_ORYSJ4.950e-4039.91Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
STSYN_PEA1.225e-2227.80Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS4_ARATH1.186e-1739.34Probable galactinol--sucrose galactosyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionC34209G03EF PostHarveN Citrus clementina cDNA clone C34209G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932543 ID=FC932543; Name=FC932543; organism=Citrus clementina; type=EST; length=692bp
CCTTTTGAAGAATCAGCCAAGCTGTGAAGGCTGTAGAAAAATACATGCAA
ACTTTCACTCATCGAGAGAAGAAGAAGTTTCCTTCTTTTCTTGACTGGTT
TGGCTGGTGCACCTGGGATGCTTTCTACACTGATGTCACAGCTGAGGGTG
TTGATGAAGGTCTTAAAAGTCTGTCAGCTGGAGGGACTCCTCCAAAATTT
CTTATCATAGATGATGGTTGGCAACAGATTGAAAATAAACCTAAAGAGGA
AAGTAATTGCATTGTACAAGAAGGAGCACAGTTTGCAAGCAGGCTCACTG
GAATCAAAGAGAATTCAAAATTCCAAAAGAAGTGCCAGAATAGTGAGCAG
GTCTCAGGCCTCAAGCACGTTGTAGATGAATCCAAGCAGAATCACAATGT
GAAGTATGTGTATGTATGGCATGCTTTAGCTGGTTACTGGGGCGGAGTAA
AACCTGCTGCTGATGGTATGGAGCATTATGATACTGCACTAGCATACCCT
GTTACGTCGCCAGGTGTGATGGGCAACCAACCTGACATAGTTATGGACAG
CCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGAAGGTGTTCAACT
TCTACAATGAGCTTCATGCTTACCTGGCATCCTGTGGAGTAGATGGAGTA
AAAGTTGATGTGCAAACATTATTGAAACCCTTGGTGCTGGTC
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