FC932547

Overview
NameFC932547
Unique NameFC932547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 87/174 (50.00%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  176 AEKI*NTVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            AEK    +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+
Sbjct:  299 AEKEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 472          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.435e-42
Identity = 84/167 (50.30%), Postives = 118/167 (70.66%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+
Sbjct:  312 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 478          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.435e-42
Identity = 84/167 (50.30%), Postives = 118/167 (70.66%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+
Sbjct:  313 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.435e-42
Identity = 84/167 (50.30%), Postives = 118/167 (70.66%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+
Sbjct:  313 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 4.153e-42
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA  +G   +TLLD+L+ G +A+
Sbjct:  313 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 83/167 (49.70%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            +G +PAEV+  C IT   ++DP AA  +V    GVL+ I P K Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+
Sbjct:  313 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.692e-41
Identity = 82/167 (49.10%), Postives = 118/167 (70.66%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            +G +PAEV+  C IT   +ADP AA  +V    GVL+ I PGK Y+DMSTVD ET  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ +Y++  S    +GK +FFLGEVGN A+M L++NM+ G  M T +EG+ LA+ +G   +TLLD+L+ G +A+
Sbjct:  294 MGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTGQSQQTLLDILNQGQLAS 460          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.291e-39
Identity = 80/168 (47.62%), Postives = 117/168 (69.64%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVSGS+Q +  G LVI++AG++++Y++  S    +GK +FF+ GE GN A+M L++NM+ G  M T +EGL LA+ +G   +T LD+L  G +A+
Sbjct:  221 LGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATGQSQQTFLDILCQGQMAS 388          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 70/167 (41.92%), Postives = 109/167 (65.27%), Query Frame = 2
Query:  197 VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            V  +P++VI+   +T   +ADP  A  +VF   GV+     GKGY++M+ VD ETS  I+  I +KGG +LEA + GSK  AE G L+IL+AGE+ L++E  +    I + +F++G+VGN  KM LV+ MI G M+   +EGL LA+++GL  + +L+VL+L  +++
Sbjct:  319 VADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYMGDVGNATKMNLVLQMISGVMLAGIAEGLALADRAGLQQKDVLEVLELTSMSS 485          
BLAST of FC932547 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 139.428 bits (350), Expect = 1.749e-32
Identity = 67/175 (38.29%), Postives = 112/175 (64.00%), Query Frame = 2
Query:  173 KAEKI*NTVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 697
            K +++   V  +P++V++   +T   ++DP  A  +VF   GV+     GKGY++M+ VD ETS  I+ AI SKGG +LEA + GSK  AE G L+IL++G++ L++E  S    I + +F+LG+VGN  KM L++ MI G  +   +E + LA+++GL  + +L+VL+L  +++
Sbjct:  318 KFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYLGDVGNATKMNLILQMISGITLAGVAEAMALADRAGLQQKDVLEVLELTNMSS 492          
The following BLAST results are available for this feature:
BLAST of FC932547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GLYR1_MOUSE8.368e-4350.00Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
GLYR1_RAT2.435e-4250.30Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_CHICK2.435e-4250.30Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_BOVIN2.435e-4250.30Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_HUMAN4.153e-4250.30Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_PONAB2.061e-4149.70Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_XENTR2.692e-4149.10Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_DANRE3.291e-3947.62Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_AEDAE9.274e-3441.92Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
GLYR1_ANOGA1.749e-3238.29Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]

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Properties
Property NameValue
Genbank descriptionC34209G07EF PostHarveN Citrus clementina cDNA clone C34209G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932547 ID=FC932547; Name=FC932547; organism=Citrus clementina; type=EST; length=700bp
AGGGACTTGAAATTTAGTGTTCCATTAAAGCTGATAATGATATTTTGATT
GTATAATACATTTTTCTGTTGTTTAATATAAAATGACAATGATATAGATC
GTATCAAGGATTAAAGATTCTTGCTTTATGTAAGTTTGGACTCTGCTGAG
AGTTGCAAGTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGTTG
GAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTATTGGGATG
TTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAAGGTGGTGT
TTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGTCAACAGTTG
ATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAAAAGGCGGT
CACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCAGAAACTGG
TCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGATGAAGCAA
TTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGGGGGAGGTC
GGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAATGGGCTGTAT
GATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAGTGGACTTG
ACCCTCGCACTTTACTTGATGTACTGGACCTGGGTGGTATTGCTAATCCT
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