FC932548

Overview
NameFC932548
Unique NameFC932548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14457 contig Ccv1_Contig14457:18..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 8.625e-49
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  125 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPF--TSVAAEMTHRFST 742
            M   P  +SD+GK+A+DLL +DY   HKFT++  S+TG+ ++A+GLKK E+F+ D+++  K+ N T DVKVDT S+V T +T+ +  P  K   SF +PD KSGK++LQYLH +A I++SIGL  +PL+  S   G+  + LG ++ FDTA+ +F K  AG+  +  D  A+L L DKG    ASY H V P   T+V AE+TH FS+
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSS 208          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.181e-47
Identity = 90/208 (43.27%), Postives = 134/208 (64.42%), Query Frame = 2
Query:  125 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPFTS--VAAEMTHRFST 742
            MG  P  ++++GK+A+DLL KDY   HKF+++  S TG+ ++++G KK ++F+ D+N+  K+ N T D+KVDT S++ T +T+ +  P  K  LSFR+PD +SGKL++QYLH +A I +S+GL   P++  S  +G+  + LG +V FDT +  F K  AG+     D  A+L L +KG    ASY H V P TS  V AE+ H FST
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFST 208          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.798e-46
Identity = 89/208 (42.79%), Postives = 133/208 (63.94%), Query Frame = 2
Query:  125 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPF--TSVAAEMTHRFST 742
            M   P  ++D+GK+A+DLL KDY    KFT+S  S TG+ ++++G KK E+F+GD+N+  K+ N T D+KVDT S++ T +T+ +  P  KA LSF++P+  SGK++LQYLH +A I SS+GL   P++  S+ IG+  L  G ++ FDT      K  A +   K D   +L L +KG    ASY HA++P   T+V  +++HRFST
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFST 208          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.198e-44
Identity = 88/203 (43.35%), Postives = 134/203 (66.01%), Query Frame = 2
Query:  137 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVD-PFTSVAAEMTHRFST 742
            P  + ++GK+A+DLL +DY   HKFTL+  +S G+ ++AT  KK ++  G+I S  K+ N TVDVK ++ S+V T VT+ ++ P  K+ LSF +PD +SGK +LQY H +A + +SIGL  +P++ LS+  G+K L +G +V  DTA+ +  KY AG+  +  D  A+L L +KG +  ASY H V+   T+V AE+TH FS+
Sbjct:    4 PGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSS 206          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.431e-43
Identity = 83/206 (40.29%), Postives = 128/206 (62.14%), Query Frame = 2
Query:  125 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPFTSVAAEMTHRFST 742
            M   P  ++++GK+A+DLL +DY    KF+++  SSTG+ ++ TG  K  +F+GD+ +  K+ N T DVKV T SS+ T +T  +  P  K  +  ++PDHKSGK ++QY H +A I +S+G   TP++  S  +G+  L LG +V ++T S +F  + AG    K D +A+L+L DKG+   ASY   V P T V AE++H F+T
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTT 206          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.431e-43
Identity = 91/204 (44.61%), Postives = 131/204 (64.22%), Query Frame = 2
Query:  137 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPF-TSVAAEMTHRFST 742
            P  +S +GK+AKDLL +DY   HKFTL+  ++ G  ++AT  KK ++ +G+I S  K+ N TVDVK ++ S+V T +T  D+  P  K  LSF +PD KSGK++LQYLH +A I++SIGL   P++ LS   G+  L +G +V  DTA+ +F KY A +     D  A+L L +KG +  ASY H V+   T+V AE+TH FS+
Sbjct:    4 PGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSS 207          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 9.558e-40
Identity = 81/208 (38.94%), Postives = 127/208 (61.06%), Query Frame = 2
Query:  125 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPF--TSVAAEMTHRFST 742
            M   P  ++++GK+A+DLL KD++   KF+++  S  G+ +++TG KK ++ +GD+    +  N T D+KV T S+     T+ +  P  ++  SF++PD  SGK++LQYLH +A I +S+GL   P +  S  IGS  L +G +V FDT S +F K  AG+   K D  A+L + DKG    ASY H V+P   T+V AE++H+ S+
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSS 208          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.380e-38
Identity = 80/201 (39.80%), Postives = 126/201 (62.69%), Query Frame = 2
Query:  146 FSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDI-LPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPF--TSVAAEMTHRFS 739
            ++D+GK+ +DLL KDY+   KF L+  S  G+ ++A G +K+E   G++++  K+   TVDVK ++ S + T +T+ +   P  K+ ++  +PD +SGKL+ QYLH +A +++S+GLN  P++ LS   GSK L +G +V FDTA++ F KY A + L  PD  A+L L + G    ASY H V     T+V AE++H  S
Sbjct:    8 YTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMS 208          
BLAST of FC932548 vs. ExPASy Swiss-Prot
Match: VDAC_NEUCR (Mitochondrial outer membrane protein porin OS=Neurospora crassa GN=B7H23.070 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 57/208 (27.40%), Postives = 90/208 (43.27%), Query Frame = 2
Query:  146 FSDVGKRAKDLLNKDYDFGHKFTLSVPSST--GLGLSATGLKK-DEIFIGDINSVY--KSGNTTVDVKVDTYSSVSTKVTMVDILPS---TKAALSFRIPDHKSG-KLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQATQASYIHAVDPFTSVAAEMTHRFST 742
            FSD+ K A DLLNKD+      T+ V S+T   +    TG    D++  G +   +  K    TV    +T +++ TKV M D L      +   SF    +  G K +L +   +    +   L   P   + A +G +  + G   G+D   A+   Y+A +G + P +SAA+   D      ASY H V+      ++ T    T
Sbjct:    6 FSDIAKSANDLLNKDFYHLAAGTIEVKSNTPNNVAFKVTGKSTHDKVTSGALEGKFTDKPNGLTVTQTWNTANALETKVEMADNLAKGLKAEGIFSFLPATNARGAKFNLHFKQSNFHGRAFFDLLKGPTANIDAIVGHEGFLAGASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHKVNSQVEAGSKATWNSKT 213          
The following BLAST results are available for this feature:
BLAST of FC932548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VDAC2_SOLTU8.625e-4946.15Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU6.181e-4743.27Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA1.798e-4642.79Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ORYSJ2.198e-4443.35Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH2.431e-4340.29Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT2.431e-4344.61Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC1_ARATH9.558e-4038.94Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_MAIZE1.380e-3839.80Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC_NEUCR3.785e-1227.40Mitochondrial outer membrane protein porin OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionC34209G08EF PostHarveN Citrus clementina cDNA clone C34209G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932548 ID=FC932548; Name=FC932548; organism=Citrus clementina; type=EST; length=744bp
GAAAGGGAAAAAATACACTGCCAGTGCAAAATATCTTTTTCTCGCAAGCA
AGCTGTCGCCTGAAGCGGTCCGAACAGCCGCTTTTCTCCATTATTACAGT
GTATTTTATCGTTTCTGAGAAGAGATGGGGAGCAATCCGGCACCGTTTTC
TGATGTTGGCAAGAGAGCCAAAGACCTCTTGAACAAAGATTACGATTTTG
GGCACAAGTTTACTCTCTCGGTGCCAAGCTCCACTGGCCTGGGACTTTCA
GCAACAGGTCTGAAGAAGGATGAAATTTTTATTGGTGACATAAATAGTGT
GTACAAGAGTGGAAATACTACTGTGGATGTGAAAGTTGATACTTATTCTA
GTGTATCTACAAAAGTAACTATGGTTGATATCTTGCCATCTACCAAAGCA
GCTCTGAGCTTCAGAATACCAGATCACAAGTCTGGCAAGTTGGATCTCCA
GTACCTTCATCCCCATGCTGCCATTGATTCCAGTATTGGCCTTAATCCAA
CCCCACTTTTGGAGCTATCAGCAACAATTGGAAGTAAAGAGCTTGTTTTA
GGTGGTGAAGTCGGATTTGATACAGCTTCTGCTTCATTCATTAAGTACAC
TGCTGGGATTGGCTTGAACAAGCCAGATTTCTCTGCTGCCCTCTTACTGG
CGGATAAGGGACAGGCNACTCAGGCATCATACATTCATGCTGTGGATCCA
TTCACTTCAGTTGCCGCTGAAATGACTCATAGATTTTCTACATA
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