FC932554

Overview
NameFC932554
Unique NameFC932554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932554_ssr599 microsatellite FC932554_ssr599:599..608. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9364 contig Ccv1_Contig9364:6..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.100e-97
Identity = 172/219 (78.54%), Postives = 189/219 (86.30%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHHPK 659
            FSPFMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATG+VLGSYLA+MTV+FFW M KTDFF+D FGVRS+R    EMM+ALYLQVSI+SQALIFVTRSRSWSFIERPGLLL TAF++AQLVATF+AVYANW FARI+G GWGWAGVIWLYS+V YFPLDI KF IR++LSG+AWD LLENK AFTTKKDYG+            TLHGL  P+
Sbjct:  671 FSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMHKTDFFTDKFGVRSIRNSEHEMMSALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLENKIAFTTKKDYGREEREAQWATAQRTLHGLQPPE 889          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.216e-96
Identity = 171/219 (78.08%), Postives = 187/219 (85.39%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHHPK 659
            FS FMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATGVVLG Y A+MTVVFFW M  TDFFSD FGV+SLR   +EMM+ALYLQVSIISQALIFVTRSRSWSF+ERPG+LL  AF+IAQLVAT IAVYANW+FAR++GCGWGWAGVIWLYS++ Y PLDI+KF IRYILSGKAW+ LL+NKTAFTTKKDYGK            TLHGL  P+
Sbjct:  674 FSAFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGGYQALMTVVFFWAMHDTDFFSDKFGVKSLRNSDEEMMSALYLQVSIISQALIFVTRSRSWSFLERPGMLLVIAFMIAQLVATLIAVYANWAFARVKGCGWGWAGVIWLYSIIFYLPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPE 892          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 350.132 bits (897), Expect = 6.035e-96
Identity = 172/215 (80.00%), Postives = 187/215 (86.98%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGL 647
            FSPFMVLIIAILNDGTIMTISKDR+KPSPQPDSWKL++IF+TGVVLG Y A+MTVVFFW+M+ +DFFS+ FGVR L  RP++MMAALYLQVSIISQALIFVTRSRSWS+ E PGLLL  AFVIAQLVATFIAVYANWSFARIEG GWGWAGVIWLYS +TY PLD+LKFGIRY+LSGKAW  LLENKTAFTTKKDYGK            TLHGL
Sbjct:  671 FSPFMVLIIAILNDGTIMTISKDRMKPSPQPDSWKLRDIFSTGVVLGGYQALMTVVFFWVMKDSDFFSNYFGVRPLSQRPEQMMAALYLQVSIISQALIFVTRSRSWSYAECPGLLLLGAFVIAQLVATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGL 885          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 6.245e-93
Identity = 169/220 (76.82%), Postives = 180/220 (81.82%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHHPKQ 662
            FS FMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATGVVLG Y AIMTV+FFW   KTDFFSD FGVRS+R    E+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AF+IAQL+AT IAVYANW FA+I G GWGWAGVIWLYS+VTYFPLD+ KF IRYILSGKAW  L ENKTAFT KKDYGK            TLHGL  PK+
Sbjct:  671 FSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGL-QPKE 889          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.048e-92
Identity = 162/219 (73.97%), Postives = 184/219 (84.02%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHHPK 659
            FSPFMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATGVVLG+Y+A++TVVFFWL   T FFSD FGVRSL+ + +E++A LYLQVSIISQALIFVTRSRSWSF+ERPGLLL  AF +AQL+AT IA YA+W FARI+GCGWGW GVIW+YS+VTY PLDILKF  RY LSGKAW+ ++EN+TAFTTKKDYG+            TLHGL  P+
Sbjct:  673 FSPFMVLIIAILNDGTIMTISKDRVKPSPIPDSWKLKEIFATGVVLGTYMALVTVVFFWLAHDTTFFSDKFGVRSLQGKDEELIAVLYLQVSIISQALIFVTRSRSWSFVERPGLLLLIAFFVAQLIATLIATYAHWEFARIKGCGWGWCGVIWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPE 891          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 337.421 bits (864), Expect = 4.048e-92
Identity = 166/220 (75.45%), Postives = 184/220 (83.64%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHHPKQ 662
            FS FMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATG+VLG Y AIM+V+FFW   KTDFFSD FGVRS+R   DE+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYA+W+FA+++G GWGWAGVIW+YS+VTYFP DILKF IRYILSGKAW +L +N+TAFTTKKDYG             TLHGL  PK+
Sbjct:  671 FSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGIVLGGYQAIMSVIFFWAAHKTDFFSDKFGVRSIRDNNDELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFVIAQLVATLIAVYADWTFAKVKGIGWGWAGVIWIYSIVTYFPQDILKFAIRYILSGKAWASLFDNRTAFTTKKDYGIGEREAQWAQAQRTLHGL-QPKE 889          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 6.904e-92
Identity = 164/219 (74.89%), Postives = 181/219 (82.65%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHHPK 659
            F+PFMVLIIAILNDGTIMTISKDRVKPSP PDSWKL EIFATGVVLG+Y+A+ TV+FFWL   TDFFS  FGVRS++   +E+MAALYLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYANW FARI GCGWGWAG IW+YS++TY PLDILKF IRY L+GKAWD ++  KTAFTTKKDYGK            TLHGL  P+
Sbjct:  674 FAPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMALTTVLFFWLAHDTDFFSKTFGVRSIQGNEEELMAALYLQVSIISQALIFVTRSRSWSFVERPGFLLLIAFVIAQLVATLIAVYANWGFARIVGCGWGWAGGIWVYSIITYIPLDILKFIIRYALTGKAWDNMINQKTAFTTKKDYGKGEREAQWALAQRTLHGLPPPE 892          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 9.018e-92
Identity = 162/219 (73.97%), Postives = 186/219 (84.93%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHHPK 659
            F+PFMVLIIAILNDGTIMTISKDRVKPSP PDSWKL EIFATGVVLG+YLA++TVVFFWL+ KTDFF++ FGV S+R    + M+ALYLQVSI+SQALIFVTRSRSWSF+ERPG LL TAF++AQLVAT IAVYANW FARI+G GWGWAGVIWL+S+V YFPLDI KF IR++LSG+AWD LL+NKTAFTTK++YGK            TLHGL  P+
Sbjct:  671 FAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGTYLALVTVVFFWLIHKTDFFTNKFGVESIRNTEFKEMSALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVTAFLLAQLVATLIAVYANWDFARIKGIGWGWAGVIWLFSIVFYFPLDIFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPE 889          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.701e-90
Identity = 161/215 (74.88%), Postives = 179/215 (83.26%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGL 647
            FSPFMVLI+AILNDGTIMTISKDRVKPSP PDSWKLKEIFATGVVLG+YLA+MTVVFFW    TDFFS  FGVRS+   P E+ AA+YLQVSI+SQALIFVTRSRSWS++ERPG  L +AF +AQL+AT IAVYANW+FARI G GWGWAGVIWLYS+V Y PLDILKF IRY LSG+AWD ++ENKTAFT+KKDYGK            TLHGL
Sbjct:  676 FSPFMVLIVAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLAVMTVVFFWAAESTDFFSAKFGVRSISGNPHELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGFWLISAFFMAQLIATLIAVYANWNFARIRGIGWGWAGVIWLYSIVFYIPLDILKFIIRYSLSGRAWDNVIENKTAFTSKKDYGKGEREAQWAQAQRTLHGL 890          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 3.921e-87
Identity = 158/217 (72.81%), Postives = 174/217 (80.18%), Query Frame = 3
Query:    3 FSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLHH 653
            FSPFMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATGVVLG Y+AIMTVVFFW   KTDFF   F VR LR    EMM+ALYLQVSI+SQALIFVTRSRSWSF ERPG  L  AF +AQL+AT IAVY NW FARI+G GWGWAGVIWLYS+V YFPLDI+KF IRYIL+G AW  +++N+TAFTTK++YG             TLHGL +
Sbjct:  672 FSPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYMAIMTVVFFWAAYKTDFFPRTFHVRDLRGSEHEMMSALYLQVSIVSQALIFVTRSRSWSFTERPGYFLLIAFWVAQLIATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIMKFAIRYILAGTAWKNIIDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQN 888          
The following BLAST results are available for this feature:
BLAST of FC932554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMA1_ORYSJ1.100e-9778.54Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]
PMA4_NICPL1.216e-9678.08Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
PMA5_ARATH6.035e-9680.00ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
PMA2_ARATH6.245e-9376.82ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA6_ARATH4.048e-9273.97ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_ARATH4.048e-9275.45ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA8_ARATH6.904e-9274.89ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT9.018e-9273.97Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]
PMA9_ARATH1.701e-9074.88ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]
PMA3_ARATH3.921e-8772.81ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC34209H02EF PostHarveN Citrus clementina cDNA clone C34209H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932554 ID=FC932554; Name=FC932554; organism=Citrus clementina; type=EST; length=675bp
ACTTTTCTCCATTCATGGTTCTGATTATTGCCATTTTAAATGACGGAACA
ATCATGACAATTTCAAAGGATCGTGTTAAGCCGTCCCCTCAACCAGACAG
CTGGAAACTAAAAGAGATTTTTGCCACTGGCGTTGTGCTTGGAAGTTACT
TGGCCATCATGACTGTTGTATTCTTCTGGTTAATGAGGAAGACTGACTTT
TTCTCGGACGCGTTTGGTGTAAGATCATTAAGAACTAGACCCGATGAGAT
GATGGCCGCTTTATACTTGCAAGTCAGTATTATTAGCCAGGCCCTTATTT
TTGTCACGAGGTCCCGCAGCTGGTCCTTTATTGAACGCCCTGGACTTCTC
TTAGCCACGGCATTTGTGATTGCTCAGCTTGTAGCAACTTTCATAGCGGT
CTATGCAAATTGGAGTTTTGCACGGATAGAGGGTTGTGGCTGGGGCTGGG
CCGGGGTAATCTGGCTTTACAGTCTGGTAACATATTTTCCTCTTGACATA
CTCAAGTTCGGAATCCGCTACATCCTCAGTGGAAAGGCTTGGGATACTCT
TCTGGAGAACAAGACTGCCTTCACTACCAAGAAAGACTACGGTAAAGAAG
AGAGAGAGGCACAATGGGCAGCCGCACAAAGGACCTTACACGGTCTTCAC
CACCCGAAACAACGGCATTTTCTCT
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