FC932555

Overview
NameFC932555
Unique NameFC932555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932555_ssr5 microsatellite FC932555_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12975 contig Ccv1_Contig12975:96..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932555 vs. ExPASy Swiss-Prot
Match: C77A3_SOYBN (Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.420e-81
Identity = 151/215 (70.23%), Postives = 178/215 (82.79%), Query Frame = 3
Query:   33 HLFFTFLAFLLSGLIFFLASRKTKSKRXXXXXXXXXXXXXXXXFQVARSGKPFFKYVDDLLPIYGPIFTLRMGTRTMIILSDAKLVHEALIEKGSLFATRPRENPTRTIFSCNKFTVNAALYGPVWRSLRRNMVQNMLSSSRIREFREVRNKAMDKLINRLKAGAEATNGIVWVLKNARFAVFCILLAMCFGIDMDEKTIEKMDQVMKSVLIVLD 677
            H  FT LAF +SGLIFFL  +K+KSK+                FQVARSGKPFF+YV+D+   YG IFTL+MGTRTMIIL+DAKLVHEA+I+KG+ +ATRP ENPTRTIFS NKFTVNAA YGPVW+SLRRNMVQNMLSS+R++EFR VR+ AMDKLINRLK  AE  NG+VWVLK+ARFAVFCIL+AMCFG++MDE+T+E++DQVMKSVLI LD
Sbjct:    9 HFIFTALAFFISGLIFFL-KQKSKSKKFNLPPGPPGWPIVGNLFQVARSGKPFFEYVNDVRLKYGSIFTLKMGTRTMIILTDAKLVHEAMIQKGATYATRPPENPTRTIFSENKFTVNAATYGPVWKSLRRNMVQNMLSSTRLKEFRSVRDNAMDKLINRLKDEAEKNNGVVWVLKDARFAVFCILVAMCFGLEMDEETVERIDQVMKSVLITLD 222          
BLAST of FC932555 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.819e-80
Identity = 150/224 (66.96%), Postives = 181/224 (80.80%), Query Frame = 3
Query:    6 SSSSMAVAIHLFFTFLAFLLSGLIFFLASRKTKSKRXXXXXXXXXXXXXXXXFQVARSGKPFFKYVDDLLPIYGPIFTLRMGTRTMIILSDAKLVHEALIEKGSLFATRPRENPTRTIFSCNKFTVNAALYGPVWRSLRRNMVQNMLSSSRIREFREVRNKAMDKLINRLKAGAEATNGIVWVLKNARFAVFCILLAMCFGIDMDEKTIEKMDQVMKSVLIVLD 677
            S+SS++   HL FT LAF++S +I+FL S+K +SK+                 QVARSGKPFF+ + +L   YGPIFTLRMGTRTMIILS+A LVHEALI KG +FATRPRENPTRT+FSC+KFTVNAA+YGPVWRSLR+NMVQN LSS R++EFR VR  AMDK+I +++A A+A  G+VWVLKNARFAVFCILLAMCFG++MDEKTIEK+DQ+MKSVLI LD
Sbjct:    5 STSSLSSYYHLIFTILAFVISSIIYFL-SKKAESKKLKLPPGPPGWPVVGNLLQVARSGKPFFQIMRELRQKYGPIFTLRMGTRTMIILSNADLVHEALILKGQVFATRPRENPTRTVFSCDKFTVNAAVYGPVWRSLRKNMVQNGLSSIRLKEFRAVRKSAMDKMIEKIRAEADANEGVVWVLKNARFAVFCILLAMCFGVEMDEKTIEKIDQMMKSVLIALD 227          
BLAST of FC932555 vs. ExPASy Swiss-Prot
Match: C77A1_SOLME (Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.025e-70
Identity = 137/212 (64.62%), Postives = 163/212 (76.89%), Query Frame = 3
Query:   48 FLAF-LLSGLIFFLASRKTKSKRXXXXXXXXXXXXXXXXFQVARSGKPFFKYVDDLLPIYGPIFTLRMGTRTMIILSDAKLVHEALIEKGSLFATRPRENPTRTIFSCNKFTVNAALYGPVWRSLRRNMVQNMLSSSRIREFREVRNKAMDKLINRLKAGAEATNGIVWVLKNARFAVFCILLAMCFGIDMD-EKTIEKMDQVMKSVLIVLD 677
            F AF LL  L  FL +RK KSK                 FQVA SGK FF+Y+ DL P YG IFTL+MG+RTMII++ A+L HEALI+KG +FA+RPRENPTRTIFSCNKF+VNAA+YGPVWRSLRRNMVQNMLS SR++EFRE R  AMDKLI R++  A+  N +VW LKNARFAVF IL+AMCFG++MD E+ IE++DQ+MK VLIVLD
Sbjct:    2 FTAFSLLFSLFIFLLTRKPKSKTPNLPPGPPGWPIVGNLFQVAGSGKQFFEYIRDLKPKYGSIFTLKMGSRTMIIVASAELAHEALIQKGQIFASRPRENPTRTIFSCNKFSVNAAVYGPVWRSLRRNMVQNMLSPSRLKEFREFREIAMDKLIERIRVDAKENNDVVWALKNARFAVFYILVAMCFGVEMDNEEMIERVDQMMKDVLIVLD 213          
BLAST of FC932555 vs. ExPASy Swiss-Prot
Match: C89A2_ARATH (Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 49/154 (31.82%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  225 GPIFTLRMGTRTMIILSDAKLVHEALIEKGSLFATRPRENPTRTIFSCNKFTVNAALYGPVWRSLRRNMVQNMLSSSRIREFREVRNKAMDKLINRLK--AGAEATNGIVWVLKNARFAVFCILLAMCFGIDMDEKTIEKMDQVMKSVLIVLDR 680
            GPI TLR+ +R  I ++D  L HEAL+  G+++A RP   P       ++  +++  YG  WR LRRN+   +L  SR+R +   R+  ++ L  R +   G E     + ++ +  +A+F +L+ MCFG  +DEK I++++ + +  L+ L +
Sbjct:   66 GPIVTLRITSRPAIFVADRSLTHEALVLNGAVYADRP--PPAVISKIVDEHNISSGSYGATWRLLRRNITSEILHPSRVRSYSHARHWVLEILFERFRNHGGEEP----IVLIHHLHYAMFALLVLMCFGDKLDEKQIKEVEFIQRLQLLSLTK 213          
The following BLAST results are available for this feature:
BLAST of FC932555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
C77A3_SOYBN7.420e-8170.23Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=... [more]
C77A2_SOLME2.819e-8066.96Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
C77A1_SOLME2.025e-7064.62Cytochrome P450 77A1 (Fragment) OS=Solanum melonge... [more]
C89A2_ARATH1.523e-1731.82Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CY... [more]
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Properties
Property NameValue
Genbank descriptionC34209H04EF PostHarveN Citrus clementina cDNA clone C34209H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932555 ID=FC932555; Name=FC932555; organism=Citrus clementina; type=EST; length=686bp
GGGGATCATCATCATCAATGGCAGTGGCGATTCATCTCTTCTTCACTTTC
CTAGCTTTTCTTCTTTCAGGGTTAATTTTCTTTCTAGCTTCCCGGAAAAC
AAAATCAAAACGTCCGAATCTTCCTCCAGGCCCTCCGGGTTGGCCAGTTG
TTGGCAATCTCTTCCAAGTAGCTCGCTCCGGCAAGCCTTTCTTCAAATAC
GTCGATGATCTTCTCCCAATATACGGTCCGATTTTCACCCTCAGGATGGG
AACAAGAACCATGATCATCCTGAGCGACGCCAAGCTAGTCCACGAAGCCC
TCATCGAAAAGGGTAGTCTCTTCGCCACTCGCCCTAGAGAAAACCCTACC
AGAACCATCTTCAGCTGCAACAAGTTCACCGTCAACGCCGCCCTTTACGG
GCCCGTCTGGCGGTCCCTGCGAAGAAACATGGTGCAGAACATGCTCAGTT
CAAGCAGAATTAGGGAGTTCCGTGAAGTCAGAAACAAGGCAATGGATAAA
TTAATCAACAGGCTCAAAGCTGGAGCCGAAGCTACCAACGGAATCGTTTG
GGTGCTTAAAAACGCCCGTTTCGCCGTGTTCTGTATCCTACTAGCTATGT
GTTTTGGGATTGACATGGATGAGAAGACGATTGAGAAAATGGATCAAGTG
ATGAAGAGTGTGTTGATTGTTTTGGATCGAGAATCG
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