FC932564

Overview
NameFC932564
Unique NameFC932564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMY1_LIPKO (Alpha-amylase 1 OS=Lipomyces kononenkoae GN=LKA1 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.208e-40
Identity = 82/191 (42.93%), Postives = 112/191 (58.64%), Query Frame = 3
Query:   66 DVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMP-VSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLC 635
            D   + SF EN D PR  S++ D ++ KN + FT+L DGIPIIY GQEQ L+G + P NREA+W T Y T++  Y+ IA LN+IRNHA ++   Y       I+   + +A  KG  G Q++ VLS   S+  +Y + +    Y A +VV  +L+C   TVD  G L V M  G PRVFYP   + G G+C
Sbjct:  432 DTTLLGSFLENQDNPRFPSYTSDESLIKNAIAFTILSDGIPIIYYGQEQGLNGGNDPYNREALWPTGYSTTSTFYEYIASLNQIRNHAIYIDDTYLTYQNWVIYSDSTTIAMRKGFTGNQIITVLSNLGSSGSSYTLTLSNTGYTASSVVYEILTCTAVTVDLSGNLAVPMSGGLPRVFYPESQLVGSGIC 622          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMY_ASPSH (Alpha-amylase OS=Aspergillus shirousami GN=amy PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.041e-38
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 3
Query:   63 PDVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMP-VSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLC 635
            PD   + +F ENHD PR  S++ D+A+AKN+  F +L DGIPIIY GQEQH +G + P NREA W + Y T +ELY+LIA  N IRN+A      +      PI++  + +A  KG  G Q+V +LS + ++  +Y + +    Y AG  +  V+ C   TV + G + V M  G PRV YP + + G  +C
Sbjct:  305 PDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKIC 496          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMYA3_ASPOR (Alpha-amylase A type-3 OS=Aspergillus oryzae GN=amy3 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.041e-38
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 3
Query:   63 PDVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMP-VSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLC 635
            PD   + +F ENHD PR  S++ D+A+AKN+  F +L DGIPIIY GQEQH +G + P NREA W + Y T +ELY+LIA  N IRN+A      +      PI++  + +A  KG  G Q+V +LS + ++  +Y + +    Y AG  +  V+ C   TV + G + V M  G PRV YP + + G  +C
Sbjct:  305 PDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKIC 496          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMYA1_ASPOR (Alpha-amylase A type-1/2 OS=Aspergillus oryzae GN=amy1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.041e-38
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 3
Query:   63 PDVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMP-VSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLC 635
            PD   + +F ENHD PR  S++ D+A+AKN+  F +L DGIPIIY GQEQH +G + P NREA W + Y T +ELY+LIA  N IRN+A      +      PI++  + +A  KG  G Q+V +LS + ++  +Y + +    Y AG  +  V+ C   TV + G + V M  G PRV YP + + G  +C
Sbjct:  305 PDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKIC 496          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMYB_ASPAW (Alpha-amylase B OS=Aspergillus awamori GN=amyB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   63 PDVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMP-VSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLC 635
            PD   + +F ENHD PR  S++ D+A+AKN+  F +L DGIPIIY GQEQH +G + P NREA W + Y T +ELY+LIA  N IRN+A      +      PI++  + +   KG  G Q+V +LS + ++  +Y + +    Y AG  +  V+ C   TV + G + V M  G PRV YP + + G  +C
Sbjct:  305 PDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASRNAIRNYAISKDTGFVTYKNWPIYKDDTTIPMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKIC 496          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMYA_ASPAW (Alpha-amylase A OS=Aspergillus awamori GN=amyA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   63 PDVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMP-VSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLC 635
            PD   + +F ENHD PR  S++ D+A+AKN+  F +L DGIPIIY GQEQH +G + P NREA W + Y T +ELY+LIA  N IRN+A      +      PI++  + +   KG  G Q+V +LS + ++  +Y + +    Y AG  +  V+ C   TV + G + V M  G PRV YP + + G  +C
Sbjct:  305 PDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASRNAIRNYAISKDTGFVTYKNWPIYKDDTTIPMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKIC 496          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMYA_ASPNG (Acid alpha-amylase OS=Aspergillus niger PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 78/192 (40.62%), Postives = 108/192 (56.25%), Query Frame = 3
Query:   66 DVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMPVS-YNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLCG 638
            D   + +F ENHD PR   ++ D + AKN+L +  L DGIPI+Y G+EQH +G  VP NREA W + YDTS ELY  IA  N IR  A    + Y   +    +   + +A  KG  G QV+ VLS + S+  +Y + +  S Y +GT ++   +C + TVD+ G + V M  G PRV  PA  +D   LCG
Sbjct:  285 DPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYITYANDAFYTDSNTIAMAKGTSGSQVITVLSNKGSSGSSYTLTLSGSGYTSGTKLIEAYTCTSVTVDSSGDIPVPMASGLPRVLLPASVVDSSSLCG 476          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMY2_DEBOC (Alpha-amylase 2 OS=Debaryomyces occidentalis GN=SWA2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.008e-33
Identity = 69/192 (35.94%), Postives = 113/192 (58.85%), Query Frame = 3
Query:   66 DVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMPVSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLCGY 641
            D+  + +F ENHD+PR+ S++ D A+ KN + F ++ DGIPIIY GQEQ  SG+S P NREA+W + Y TS   Y+LI+ +N+IRN A +  + Y    +  ++  G  +A  +G   +++V V +   S SG+  +     Y+ G  V++VL+C+    ++   L V +  G PR++ PA  +   G+C +
Sbjct:  317 DITLLGNFIENHDQPRLPSYTSDSALIKNAIAFNLMSDGIPIIYYGQEQGYSGSSDPNNREALWLSGYSTSNGYYKLISSVNQIRNQAIYKDSKYTTYWSDVLYASGHVIALQRGADDQRIVSVFNNLGS-SGSQTVTFSTKYSGGEKVVDVLTCQTSYANSDSTLTVSISGGAPRIYAPASLIANSGICNF 507          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMY1_DEBOC (Alpha-amylase 1 OS=Debaryomyces occidentalis GN=AMY1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32
Identity = 69/193 (35.75%), Postives = 108/193 (55.96%), Query Frame = 3
Query:   57 SMPDVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMPVSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGIGLC 635
            S  DV+ + +F ENHD+ R  S + D ++ KN + F +L DGIPIIY GQEQ L+G S P NREA+W + Y+T +E Y+LI+KLN+IRN A    + Y    +  +      +A  KG    Q++ + +   S            Y++G  V++++SC +    + G L V +  G P+V+ P+  + G G+C
Sbjct:  318 SCSDVSLLGNFIENHDQVRFPSVTSDTSLIKNDMAFIILGDGIPIIYYGQEQGLNGGSDPANREALWLSGYNTDSEYYELISKLNQIRNQAIKKDSAYSTYKSSVVSSSDHYIATRKGSDANQLISIFNNLGSNGSQDITVSNTGYSSGDKVIDIISCNSVLAGDSGSLSVSISGGMPQVYAPSSVLSGSGIC 510          
BLAST of FC932564 vs. ExPASy Swiss-Prot
Match: AMY1_SACFI (Alpha-amylase OS=Saccharomycopsis fibuligera GN=ALP1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 3
Query:   57 SMPDVNAMASFSENHDKPRIGSFSKDMAMAKNILVFTMLFDGIPIIYQGQEQHLSGNSVPVNREAIWHTKYDTSTELYQLIAKLNRIRNHAAHLSADYFEDSTHPIFQGGSELAFTKGVQGRQVVMVLSTQSSTSGAYQIDMPVSYNAGTVVMNVLSCKNYTVDNQGMLHVDMDKGEPRVFYPAQYMDGI 626
            S  D   + +F ENHD  R  S + D ++  N + F +L DGIP+IY GQEQ LSG S P NREA+W + Y+  ++ Y+LIAK N  RN A +  + Y       IF     +A  +G     VV V +   S+  +        Y++G  ++ VL+C   TV     L V +  G+P++F PA+Y   I
Sbjct:  309 SCSDPTLLTNFVENHDNERFASMTSDQSLISNAIAFVLLGDGIPVIYYGQEQGLSGKSDPNNREALWLSGYNKESDYYKLIAKANAARNAAVYQDSSYATSQLSVIFSNDHVIATKRG----SVVSVFNNLGSSGSSDVTISNTGYSSGEDLVEVLTCS--TVSGSSDLQVSIQGGQPQIFVPAKYASDI 492          
The following BLAST results are available for this feature:
BLAST of FC932564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
AMY1_LIPKO7.208e-4042.93Alpha-amylase 1 OS=Lipomyces kononenkoae GN=LKA1 P... [more]
AMY_ASPSH1.041e-3840.63Alpha-amylase OS=Aspergillus shirousami GN=amy PE=... [more]
AMYA3_ASPOR1.041e-3840.63Alpha-amylase A type-3 OS=Aspergillus oryzae GN=am... [more]
AMYA1_ASPOR1.041e-3840.63Alpha-amylase A type-1/2 OS=Aspergillus oryzae GN=... [more]
AMYB_ASPAW5.166e-3840.10Alpha-amylase B OS=Aspergillus awamori GN=amyB PE=... [more]
AMYA_ASPAW5.166e-3840.10Alpha-amylase A OS=Aspergillus awamori GN=amyA PE=... [more]
AMYA_ASPNG2.564e-3740.63Acid alpha-amylase OS=Aspergillus niger PE=1 SV=1[more]
AMY2_DEBOC1.008e-3335.94Alpha-amylase 2 OS=Debaryomyces occidentalis GN=SW... [more]
AMY1_DEBOC7.225e-3235.75Alpha-amylase 1 OS=Debaryomyces occidentalis GN=AM... [more]
AMY1_SACFI2.405e-2735.79Alpha-amylase OS=Saccharomycopsis fibuligera GN=AL... [more]

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Properties
Property NameValue
Genbank descriptionC34210A03EF PostHarveN Citrus clementina cDNA clone C34210A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932564 ID=FC932564; Name=FC932564; organism=Citrus clementina; type=EST; length=738bp
GGGATAATGTTGGGCCGATGGCCATACGTCCCTTTTGGCGCAAGAAGTGG
AGAATCTCGATGCCAGACGTCAATGCTATGGCCTCTTTCTCTGAAAATCA
CGACAAGCCTCGAATTGGTAGCTTCTCCAAGGATATGGCGATGGCTAAAA
ACATCCTGGTGTTTACCATGCTGTTTGACGGTATCCCAATTATATACCAA
GGCCAAGAGCAACATCTGTCAGGAAATAGTGTGCCTGTCAATCGAGAAGC
CATCTGGCACACCAAATACGACACCAGCACAGAGCTCTACCAGCTGATTG
CAAAGCTAAATCGCATTCGGAACCACGCAGCCCACTTGAGCGCAGACTAC
TTCGAAGACTCGACTCATCCTATTTTCCAGGGAGGCAGTGAGCTTGCTTT
CACGAAAGGTGTGCAGGGTCGACAAGTAGTCATGGTGTTATCCACTCAAT
CCTCGACCAGTGGAGCCTACCAAATCGACATGCCAGTCAGCTACAATGCC
GGTACGGTGGTGATGAATGTTCTGAGCTGTAAGAACTATACTGTCGACAA
CCAGGGTATGCTGCATGTCGACATGGATAAGGGAGAGCCCCGGGTTTTCT
ACCCTGCGCAATACATGGACGGTATTGGTCTTTGTGGCTACCCTGATTCC
AACGTTTCCCTCACGACGTTGAAGACTCAAAATGAGAAGACTTCGGCTGG
AGTTCAATCACTAGTGGTACGGTCTAGCTGCTCTCTGC
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