FC932566

Overview
NameFC932566
Unique NameFC932566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932566 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 63/196 (32.14%), Postives = 91/196 (46.43%), Query Frame = 1
Query:    7 GLRILTNLNLSDCGITE--LPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPELPCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFINCFNLDGDELKEIAKDAQLKIQLMATAWWNEYHKESYETPLGCISFPG----SEVPDWFSFQSAGSSTILKLPPVSF-SDKFVGIALC 573
            GL  L  LNLS C + +  LP  +G LSSL  L   RNNFE +P+SI  L  L  L L  C+RL  LPELP  ++++  +C  +LK +  L           + L+ +   +   D +  +   A    Q +++      H  S    L    F G     ++P WF  Q   SS  + LP   +  DKF+G A+C
Sbjct:  831 GLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIHYL-------VTKRKKLHRVKLDDAHNDTMYNLF--AYTMFQNISSM----RHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013          
The following BLAST results are available for this feature:
BLAST of FC932566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMVRN_NICGU9.279e-1432.14TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionC34210A05EF PostHarveN Citrus clementina cDNA clone C34210A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932566 ID=FC932566; Name=FC932566; organism=Citrus clementina; type=EST; length=755bp
ATGTCAGGCTTGCGCATTCTGACAAATCTAAATCTCTCCGATTGCGGCAT
CACGGAATTACCCAACAGTCTTGGCCAGTTATCCTCATTACATATACTGT
TTCGAGATAGAAACAATTTTGAGAGAATTCCGACAAGCATCATACACCTT
ACAAATTTATTCTTGCTCAAGTTAAGCTATTGTGAGAGGCTTCAATCCTT
ACCAGAACTTCCATGCAATATAAGCGACATGGATGCAAATTGTTGTACAT
CACTAAAGGAATTATCAGGTTTATCTATTCTATTCACACCAACAACATGG
AATTCACAGGGACTCAACTTCATCAATTGTTTCAATTTGGATGGAGATGA
GCTCAAAGAAATTGCCAAAGATGCCCAGCTGAAAATTCAGCTTATGGCAA
CGGCTTGGTGGAATGAATATCATAAGGAATCATATGAAACACCTTTGGGT
TGCATCAGTTTCCCTGGTAGTGAAGTTCCAGACTGGTTTAGCTTTCAGAG
TGCAGGATCTTCCACTATTCTCAAGCTGCCACCAGTTTCCTTCAGTGATA
AATTTGTTGGCATTGCTTTGTGCGTTGTTGTAGCGTTTCGAGACCATCAA
GATGAAGGGATGGGTCTTAGCATTGTCTATGAATGCAAACTCAAAGCCAG
AGATGATACGTGGCACGTCGCAGAAAGCTCTTTGTTTGACTGGGGCGATG
GGTATAGCAGACTTCGTTATGTGTTGTCCGACATGTATTTTGGGGTATGA
TTTGC
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