FC932567

Overview
NameFC932567
Unique NameFC932567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932567_ssr59 microsatellite FC932567_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932567_ssr71 microsatellite FC932567_ssr71:71..82. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15532 contig Ccv1_Contig15532:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932567 vs. ExPASy Swiss-Prot
Match: CBBY_RHOCA (Protein cbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  213 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNW--DPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFENPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRSMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAXDDVKQR 725
            L+ALIFD DG + E+E +HRQA+N+ F+           Q L+W    E Y  L    GG K +M  + +  G            +    AK+ DL +  KT+RY +II SG V   PGV   +D AKA+G ++A+ +  T+++V   +         +  +   A D+V Q+
Sbjct:    3 LKALIFDVDGTLAETEEVHRQAFNETFA----------AQGLDWYWSKEDYRTLLRTTGG-KERMAKHRENLG------------SGPSDAKIADLHKA-KTQRYVEIIASGQVGLLPGVAELIDRAKASGLRLAIATTTTRANVDALIAATFSKPAGDIFEVIAAGDEVAQK 151          
BLAST of FC932567 vs. ExPASy Swiss-Prot
Match: CBBY_RHOSH (Protein cbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 49/171 (28.65%), Postives = 78/171 (45.61%), Query Frame = 3
Query:  213 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFENPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRSMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAXDDVKQR 725
            ++A++FD DG + E+E LHR+A+N+ F+   V           WD E Y  L    GG +   R+   + G P+       P+ D  +A         KTER+  ++  G +  RPG+   + EAK AG ++AV +  +  +V        G    E  D   A D V ++
Sbjct:    2 IEAILFDVDGTLAETEELHRRAFNETFAALGV--------DWFWDREEYRELLTTTGGKERIARFLRHQKGDPAPL-----PIADIHRA---------KTERFVALMAEGEIALRPGIADLIAEAKRAGIRLAVATTTSLPNVEALCRACFGHPAREIFDVIAAGDMVAEK 150          
The following BLAST results are available for this feature:
BLAST of FC932567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CBBY_RHOCA7.454e-1331.79Protein cbbY OS=Rhodobacter capsulatus GN=cbbY PE=... [more]
CBBY_RHOSH5.342e-1128.65Protein cbbY OS=Rhodobacter sphaeroides GN=cbbY PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34210A06EF PostHarveN Citrus clementina cDNA clone C34210A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932567 ID=FC932567; Name=FC932567; organism=Citrus clementina; type=EST; length=735bp
AAAATTTTACAAACAAATTCATGGCTTCTACGGTGATCCTCTCTCAAACA
GCAACTCTTTCTTCTTCTTCTACTACTACTACTGCCAAATTTTCTTCTTT
AACTCATAATCCTATCTTTCACACCAATGCTCTCCGTTTTAAAAGTAACA
AGAAACCACTGTCCTTATCTTTAACCAGAAAAGCACTTCGCGTGTCGGCT
TCTTCACAGTCCCTTCAGGCCCTCATATTTGACTGCGATGGTGTGATTAT
TGAATCCGAGCACTTGCACCGCCAAGCTTACAATGATGCTTTCTCTCACT
TCAATGTCCGCTGCGACCCTTCTTCTCAGCAGTCTCTCAATTGGGACCCC
GAGTTTTATGACGTGCTCCAGAATCAAATTGGGGGCGGTAAACCCAAAAT
GAGATGGTACTTTAAAGAGCACGGGTGGCCATCTTCCACCATATTCGAGA
ATCCCCCAGTAACCGATGATGACCAAGCCAAGTTGATTGATCTAATTCAG
GACTGGAAAACTGAACGGTACCAACAAATTATCAAATCTGGAACTGTGGA
GCCTAGGCCAGGAGTTCTGAGATCGATGGATGAAGCCAAGGCTGCTGGGA
AAAAAGTAGCTGTTTGCTCTGCAGCAACCAAAAGTTCAGTTATACTTTGT
CTCGAAAACCTCATAGGAATGGAGCGGTTTGAAGGTCTCGACTGCTTCCT
TGCANGTGATGATGTAAAGCAAAGAAGCTGATCAT
back to top