FC932580

Overview
NameFC932580
Unique NameFC932580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig895 contig Ccv1_Contig895:225..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 1.022e-89
Identity = 158/246 (64.23%), Postives = 191/246 (77.64%), Query Frame = 2
Query:    8 QEFNTEKVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLD 745
            ++ N+EKVNF NY + FN  S  F+GYG+ A+G K+ FK Y P+ +FKDYAK GV FA                     W+EPGKFFRES LK GTV+PMPDI+DKMP+RSFLPR+I++K PFS+S +  +K IFHA ENS+M  II DA++ECERPPS GETKRC+GSAEDMIDFATSVLG SV LRTT+NV GSK+ ++IG V GINGGK+T++VSCHQSL+PYLLYYCHSVPKVRVYEADLL+
Sbjct:  327 KDSNSEKVNFVNYGQSFNPGSETFTGYGKGAEGSKLSFKTYTPNSTFKDYAKKGVAFAKYNVSTTTANTVGDGKTVNK-WIEPGKFFRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLE 571          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 7.326e-88
Identity = 158/244 (64.75%), Postives = 187/244 (76.64%), Query Frame = 2
Query:   17 NTEKVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDP 748
            N EKV+F NY +  N  S  FSGYG+ A+G KI FK Y  + +FKDY KTGV FA                     WVEPGKFFRESMLK GT++ MPDI+DKMP+RSFLPR+IVSK PFS+S +  +K +FHA++NS+ME II DA+ ECERPP+  ETKRC+GSAEDMIDFATSVLG SV LRTT++V GSK+ +MIG V GINGG+VT+SVSCHQSL+PYLLYYCHSVPKVRVYE+DLLDP
Sbjct:  331 NFEKVDFVNYGKSINPGSESFSGYGKGAEGNKIDFKTYTQNSTFKDYTKTGVEFAKYNRSSLGGGKTVNK------WVEPGKFFRESMLKEGTLIWMPDIKDKMPKRSFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGIITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDP 568          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.210e-82
Identity = 150/251 (59.76%), Postives = 181/251 (72.11%), Query Frame = 2
Query:    8 QEFNTEKVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDP 748
            ++ N  + NF NY + FN  +  F+ YG+  +   I FK YG + +FKDY K   TF+                         WVEPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPR I SK PFS+S +  LK+IFHA + S +E +I DALSECER PS GETKRC+ SAEDMIDFATSVLG +V +RTT++ +GS  NIMIGSVKGINGGKVT+SVSCHQ+L+PYLLYYCHSVPKVRVYEAD+LDP
Sbjct:  326 KDANGGEANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQVLASLMEVNGGKKVNNRWVEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDP 576          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.025e-81
Identity = 147/251 (58.57%), Postives = 182/251 (72.51%), Query Frame = 2
Query:    8 QEFNTEKVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDP 748
            ++ N  + NF NY + FN  +  F+ YG+  +   I FK YG + +FKDY K   TF+                         W+EPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI +K PFS+S ++ LK+IFHA+ +S +  +I DALSECER PS GETK+C+ SAEDMIDFATSVLG +V +RTT+N  GSK NIMIGS+KGINGGKVT+SVSCHQ+L+P LLYYCHSVPKVRVYEAD+LDP
Sbjct:  328 KDANGGEANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDP 578          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.338e-81
Identity = 147/251 (58.57%), Postives = 181/251 (72.11%), Query Frame = 2
Query:    8 QEFNTEKVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDP 748
            ++ N  + NF NY + FN  +  F  YG+  +   I FK YG + +FKDY K   TF+                         W+EPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI +K PFS+S ++ LK+IFHA+ +S +  +I DALSECER PS GETK+C+ SAEDMIDFATSVLG +V +RTT+N  GSK NIMIGS+KGINGGKVT+SVSCHQ+L+P LLYYCHSVPKVRVYEAD+LDP
Sbjct:  325 KDANAGEANFTNYGQSFNEGTDVFITYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDP 575          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.641e-81
Identity = 149/244 (61.07%), Postives = 174/244 (71.31%), Query Frame = 2
Query:   17 NTEKVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDP 748
            N EKVNF NY + FN  S  F+GYG++  G  + FK YG  +SFK Y K GV FA                     WVE GKFFRE+MLK GT+M MPDI+DKMP+R+FLPR IV   PFSSS +  +  +F A ENSSM  II  A+SECERP S GETKRC+GSAEDMIDFATSVLG  V +RTT+NV GSK+ ++IG V GINGG VT++VSCHQSL+PYLLYYCHSVP+VRVYE DLLDP
Sbjct:  333 NNEKVNFVNYGKSFNLGSDNFTGYGQDNVGGNVSFKTYGQGQSFKVYTKDGVVFARYSNNVSSNGKTVNK------WVEEGKFFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDP 570          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.948e-60
Identity = 122/251 (48.61%), Postives = 156/251 (62.15%), Query Frame = 2
Query:   17 NTEKVNFANYQEDFNSVSHKFSGYGENAD-GQKIGFKVY-GPDRSFKDYAKTGVTF------AXXXXXXXXXXXXXXXXXXXXXWV-EPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLL 742
            N     F NY   FN  +  F GYGE ++    IGFK Y G + SFK YAK+GV F      +                     W  EPGKFFRE+ L +G  MPMPDI+DKMP R+FLPR I  K PF     N + E+F    +++M   +   ++ECER PS+GETKRC  SAED++DFA  +LGN + +R+T +  GS   I +G+V G++GGKVT+SVSCHQSLFPYL+YYCHSVPKVRVYEAD++
Sbjct:  324 NGNAAEFQNYGGSFNPGTVTFKGYGEGSNPNHHIGFKEYAGSNNSFKGYAKSGVDFKEYHNTSSADAATTMSLEAVSSGHQHLKWSPEPGKFFRETELVSGNTMPMPDIKDKMPPRAFLPRDIAKKIPFKP---NAVSEVFGVPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIM 571          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.105e-51
Identity = 112/248 (45.16%), Postives = 148/248 (59.68%), Query Frame = 2
Query:   17 NTEKVNFANYQEDFNSVSHKFSGYGENAD-GQKIGFKVY-GPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX--WV-EPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGI-NGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLL 742
            N     F +Y +  N  S  F GYG  ++   +IGF  Y G + +FK Y+  GV F                        W  EPGKFFRE  L  G  MPMPDI D+ P R+FLPR I +K PF ++ V+ L   F A+  ++M  ++   ++EC RPPS+GETKRC  SAED++DFA  +LG++V  R T++  G   ++ +G V G+  GG VT+SVSCHQSLFPYL+YYCHSVP VRVYEAD+L
Sbjct:  390 NGAAAGFESYGKSVNPGSVTFKGYGLGSNPNHRIGFARYSGDNTTFKAYSNDGVEFKEYQNMSKMEVSKIEAAARRPPLRWSPEPGKFFRERDLVAGNRMPMPDIADRTPPRAFLPRDIAAKIPFDAAAVSAL---FGAAPGTAMRQVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYEADIL 634          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.937e-46
Identity = 86/167 (51.50%), Postives = 122/167 (73.05%), Query Frame = 2
Query:  248 VEPGKFFRESMLKTGTVMPMPDIRDKMP--QRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLL 742
            ++PG FFRE  LK G V+ MPDI +++   + SFLPR+I  + PF +  V   K +F    N+++   + + +++C+  PSKGETKRC+ SAEDMIDFA ++LG+ + +R+T    G  ++IMIG VKGINGGK+T SVSCH+ LFPY++YYCHSVPK+RVYEA++L
Sbjct:  123 IKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAV---KSLFGLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESIMIGKVKGINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYEAEIL 286          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 54/164 (32.93%), Postives = 74/164 (45.12%), Query Frame = 2
Query:  263 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGS----KQNIMIGSVK-GINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADL 739
            FF E  L  G  M +        ++ FLPR+     PFSS  V  +   F     S   + +   L +CE PP++GE K C  S E M+DFATS LG S  +R    V G     +Q   + +VK    GG   Q V+CH   + Y ++ CH     R Y   +
Sbjct:  213 FFLEKDLHPGKTMAVHFTATTAGEK-FLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTS-HVRAASTVVGKEGSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRATRAYAVSM 374          
The following BLAST results are available for this feature:
BLAST of FC932580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
JP650_ARATH1.022e-8964.23Probable polygalacturonase non-catalytic subunit J... [more]
JP630_ARATH7.326e-8864.75Probable polygalacturonase non-catalytic subunit J... [more]
GP1_SOLLC1.210e-8259.76Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP3_SOLLC1.025e-8158.57Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC1.338e-8158.57Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
Y639_ARATH6.641e-8161.07Probable polygalacturonase non-catalytic subunit A... [more]
BURPC_ORYSJ4.948e-6048.61BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPE_ORYSJ1.105e-5145.16BURP domain-containing protein 14 OS=Oryza sativa ... [more]
BURPG_ORYSJ6.937e-4651.50BURP domain-containing protein 16 OS=Oryza sativa ... [more]
BURP3_ORYSJ8.270e-1532.93BURP domain-containing protein 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34210B08EF PostHarveN Citrus clementina cDNA clone C34210B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932580 ID=FC932580; Name=FC932580; organism=Citrus clementina; type=EST; length=750bp
CATACGCCAAGAGTTCAACACTGAGAAAGTCAATTTCGCCAATTACCAGG
AGGATTTCAACAGTGTCTCGCATAAATTCTCTGGATACGGGGAGAATGCG
GACGGACAAAAGATCGGGTTCAAAGTTTATGGACCAGATCGCAGTTTTAA
AGACTATGCCAAAACCGGTGTAACTTTTGCCAGCTACAGTAAAAGCGGCT
CTGGCTCAGCCAATGGCAGTTCGGTGAATAAAAATAATAATAAATGGGTG
GAGCCGGGCAAGTTCTTCCGCGAGTCTATGCTGAAGACGGGAACTGTGAT
GCCAATGCCTGACATTCGAGATAAAATGCCTCAAAGGTCGTTTCTGCCCC
GGGCCATCGTTTCCAAGTTCCCATTTTCGAGTTCCAATGTAAACGTACTC
AAGGAAATATTCCATGCAAGTGAAAATTCTAGCATGGAGAGTATAATCAA
GGATGCGTTGAGCGAGTGTGAGCGGCCACCAAGCAAGGGCGAGACCAAAC
GGTGCATTGGCTCAGCCGAGGATATGATTGACTTCGCCACCTCAGTACTG
GGAAACAGCGTGACTCTTCGTACAACTCAGAACGTGCAAGGGTCAAAACA
GAACATTATGATTGGTTCAGTGAAGGGAATCAACGGTGGCAAAGTCACCC
AATCTGTCTCTTGTCACCAAAGCTTGTTTCCATATTTGCTATACTACTGC
CACTCGGTTCCAAAAGTGAGGGTGTATGAAGCTGATTTATTGGATCCCAA
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