FC932582

Overview
NameFC932582
Unique NameFC932582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932582_ssr391 microsatellite FC932582_ssr391:391..418. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932582_ssr419 microsatellite FC932582_ssr419:419..456. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932582 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.810e-41
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 3
Query:  504 RFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKDELRDEKQRLRQRK 719
            +F+EL +ILEPG PPKTDKAAIL+DAVRMVTQLR EAQKLKDSNSSLQ+KIKELK EK+ELRDEKQRL+  K
Sbjct:   90 KFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEK 161          

HSP 2 Score: 55.0694 bits (131), Expect = 1.810e-41
Identity = 32/70 (45.71%), Postives = 40/70 (57.14%), Query Frame = 3
Query:   96 MVSPENTNWLLDYPLIDDITVPDGNSSVSASGFTWTVQPPINGPSNGCVEIDSAFGDSNGLKE-SSKKRG 302
            MVSPEN NW+ D  LID      G+ ++   GF+W VQ PI   SN    +D + G+S   KE  SKKRG
Sbjct:    1 MVSPENANWICD--LID---ADYGSFTIQGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRG 65          

HSP 3 Score: 36.965 bits (84), Expect = 1.810e-41
Identity = 18/30 (60.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  293 KKRVRXXXXXXXXXKACREKLRRDRLNDKY 382
            KKR R         KACREK RRDRLNDK+
Sbjct:   62 KKRGRCESSSATSSKACREKQRRDRLNDKF 91          
BLAST of FC932582 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.975e-35
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 3
Query:  504 RFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKDELRDEKQRLRQRK 719
            +F EL+S+LEPGR PKTDK AI+ DA+RMV Q R EAQKLKD NSSLQEKIKELK EK+ELRDEKQ+L+  K
Sbjct:   85 KFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEK 156          

HSP 2 Score: 47.3654 bits (111), Expect = 1.975e-35
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 3
Query:   96 MVSPENTNWLLDYPLIDDITVPDGNSSVSASGFTWTVQPPINGPSNGCVEIDSAFGDSNGLKE-SSKKR 299
            MVSPENTNWL DYPLI      +G  S     F W     I+G +   VE+D    D++ +KE SS+KR
Sbjct:    1 MVSPENTNWLSDYPLI------EGAFSDQNPTFPW----QIDGSATVSVEVDGFLCDADVIKEPSSRKR 59          

HSP 3 Score: 36.965 bits (84), Expect = 1.975e-35
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  293 KKRVRXXXXXXXXXKACREKLRRDRLNDKY 382
            +KR++         KACREK RRDRLNDK+
Sbjct:   57 RKRIKTESCTGSNSKACREKQRRDRLNDKF 86          
BLAST of FC932582 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.117e-21
Identity = 42/72 (58.33%), Postives = 59/72 (81.94%), Query Frame = 3
Query:  504 RFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKDELRDEKQRLRQRK 719
            +F++L+S+LEPGR PKTDK+AIL DA+R+V QLR EA +L+++N  L E+IK LKA+K+ELR+EK  L+  K
Sbjct:  181 KFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEK 252          

HSP 2 Score: 34.6538 bits (78), Expect = 3.117e-21
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  296 KRVRXXXXXXXXXKACREKLRRDRLNDKY 382
            KR R         KACREKLRR++LNDK+
Sbjct:  154 KRRRTGSCSKPGTKACREKLRREKLNDKF 182          
BLAST of FC932582 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.334e-20
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 3
Query:  504 RFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKDELRDEKQRLRQRK 719
            RF++L+S+LEPGR PKTDK AIL DA+R++ QLR EA KL+++N  L E+IK LKAEK+ELR+EK  L+  K
Sbjct:  149 RFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADK 220          

HSP 2 Score: 29.6462 bits (65), Expect = 7.334e-20
Identity = 10/16 (62.50%), Postives = 16/16 (100.00%), Query Frame = 2
Query:  335 KACREKLRRDRLNDKY 382
            KACRE+LRR++LN+++
Sbjct:  135 KACRERLRREKLNERF 150          
The following BLAST results are available for this feature:
BLAST of FC932582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILR3_ARATH1.810e-4181.94Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH1.975e-3573.61Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH034_ARATH3.117e-2158.33Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH104_ARATH7.334e-2061.11Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC34210B10EF PostHarveN Citrus clementina cDNA clone C34210B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932582 ID=FC932582; Name=FC932582; organism=Citrus clementina; type=EST; length=733bp
GATTCTCCTCTTTCTTCGAAACTCAACCGCTGTTTGTTTCCCAGGAAAAT
TTCTCTCCGCCGGAAAACCCATAAATATTATCCTGGAAATTCAAAATGGT
TTCTCCGGAAAATACGAATTGGCTATTAGATTACCCCTTGATCGACGATA
TCACTGTCCCTGATGGCAATTCCTCCGTTTCCGCTTCGGGTTTCACTTGG
ACCGTTCAGCCGCCAATTAACGGGCCGTCAAATGGCTGTGTGGAAATTGA
TTCTGCATTTGGGGATTCAAATGGTCTCAAGGAAAGCTCAAAAAAAAGAG
GGTTAGATCAGAATCATGTGGGTCTTCTAGCTCCAAGGCGTGCAGGGAAA
AGTTGCGTAGGGATCGTCTTAATGACAAGTATTATCTTGTTCTCTCTCTC
TCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACAC
ACACACGCACTCTCACACACAAGCTTGAATGTCCAATATTTGGATTGATT
TGCAGGTTTGTGGAGTTAGCCTCTATCTTAGAGCCTGGAAGGCCCCCCAA
AACAGATAAGGCAGCTATTCTGATTGATGCCGTCCGGATGGTGACTCAAT
TACGCAGTGAAGCCCAGAAGTTGAAGGACTCAAATTCAAGTCTCCAGGAG
AAGATCAAAGAGTTGAAGGCTGAGAAAGATGAGCTTCGTGATGAGAAGCA
GAGGCTAAGGCAGAGAAAGAGAGATAGAGCAGC
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