FC932583

Overview
NameFC932583
Unique NameFC932583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12223 contig Ccv1_Contig12223:5..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: UK114_MOUSE (Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 69/125 (55.20%), Postives = 95/125 (76.00%), Query Frame = 2
Query:  245 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            S +++ + T KAPAA+GPYSQA++ +  +++SG +GL P +G+ V   + ++ +Q LKN+GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY  YF    PARA YQVAALP  +RVEIE IA
Sbjct:    3 SIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGEILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIEAIA 127          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 67/125 (53.60%), Postives = 95/125 (76.00%), Query Frame = 2
Query:  245 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            S ++  + T KAP A+GPYSQA+  +  +++SG +G+ P +G+ VS  + ++ +Q LKN+GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY +YF S  PARA YQVAALP  +R+EIE +A
Sbjct:    3 SLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVA 127          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: UK114_RAT (Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 2
Query:  245 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            S +++ + T+KAPAA+G YSQA+  +  ++VSG +G+ P +G+ V   + ++ +Q LKN+GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY  YF    PARA YQVAALP  +R+EIE IA
Sbjct:    3 SIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIA 127          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: UK114_BOVIN (Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33
Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 2
Query:  245 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            S +++ + T KAPAA+GPYSQA+  +  +++SG LG+ P +G+ V   + ++ +Q L NIGEILKA+G D+++VVK T+LLAD+ DF TVN++Y +YF S  PARA YQVAALP   RVEIE IA
Sbjct:    3 SLVRKIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSTVNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIA 127          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: YSD2_CAEEL (UPF0076 protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  254 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            ++ + +  AP A+GPYSQA++A N +++SG LGL P+TG      +E QT Q LKN+GE+LKA+GADY +VVKTT+LL ++ DF  VNE+Y +YF SP PARA YQVAALP    VEIE +A
Sbjct:   41 RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVA 161          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: UK114_CAPHI (Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 66/125 (52.80%), Postives = 91/125 (72.80%), Query Frame = 2
Query:  245 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            S ++  + T KAPAA+GPYSQA+  +  +++SG LG+ P +G+ V   + ++ +Q L NIGEILKA+G D+++VVK T+LLAD+ DF  VN++Y +YF S  PARA YQVAALP   RVEIE IA
Sbjct:    3 SLVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIA 127          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y944_HELPY (UPF0076 protein HP_0944 OS=Helicobacter pylori GN=HP_0944 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  251 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            +KE + +  AP A+GPYSQAI  N+LVFVSG LG+   TG+F    I  QT Q ++NI  ILK +G    SVVKTTILL  L DF  VN IY  YF  P PARAT+QVA LP DA VEIE IA
Sbjct:    1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIEAIA 123          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y944_HELPJ (UPF0076 protein jhp_0879 OS=Helicobacter pylori J99 GN=jhp_0879 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  251 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            +KE + +  AP A+GPYSQAI  N+LVFVSG LG+   TG+F    I  QT Q ++NI  ILK +G    SVVKTTILL  L DF  VN IY  YF  P PARAT+QVA LP DA VEIE IA
Sbjct:    1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIEAIA 123          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y4SK_RHISN (UPF0076 protein y4sK OS=Rhizobium sp. (strain NGR234) GN=NGR_a01620 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  257 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 625
            E + TN AP A+GPYSQAIK  +L+FVSG L + P TG+F S    +Q EQ LKN+  I +A+G D S  VKTT+LL DL DF  +N +Y  +F +P PARA Y+V ALP  A+VEIE + +L
Sbjct:    3 EPISTNDAPGAVGPYSQAIKVGDLLFVSGQLPIDPATGEFNSANAVEQAEQCLKNLQAIARAAGTDLSKTVKTTVLLTDLGDFADINRVYTGFFSTPYPARACYEVKALPKGAKVEIEAVISL 125          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y854_PYRHO (UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 59/123 (47.97%), Postives = 83/123 (67.48%), Query Frame = 2
Query:  251 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            +KE + T  AP  +GPYSQAIKA N +F++G + + P+TG+ V   I+DQT QVL+NI  IL+A+G   + V+K T+ L D+ DF  +NE+YA+YF    PAR   +V+ LP D  +EIE IA
Sbjct:    1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIA 123          
The following BLAST results are available for this feature:
BLAST of FC932583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
UK114_MOUSE1.484e-3455.20Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 ... [more]
UK114_HUMAN2.532e-3453.60Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 ... [more]
UK114_RAT2.799e-3353.60Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 ... [more]
UK114_BOVIN4.774e-3353.60Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV... [more]
YSD2_CAEEL6.235e-3355.74UPF0076 protein C23G10.2 OS=Caenorhabditis elegans... [more]
UK114_CAPHI3.095e-3252.80Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 ... [more]
Y944_HELPY4.941e-3057.72UPF0076 protein HP_0944 OS=Helicobacter pylori GN=... [more]
Y944_HELPJ4.941e-3057.72UPF0076 protein jhp_0879 OS=Helicobacter pylori J9... [more]
Y4SK_RHISN1.101e-2952.85UPF0076 protein y4sK OS=Rhizobium sp. (strain NGR2... [more]
Y854_PYRHO3.541e-2847.97UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34210B11EF PostHarveN Citrus clementina cDNA clone C34210B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932583 ID=FC932583; Name=FC932583; organism=Citrus clementina; type=EST; length=719bp
GATTCAACTCTCGCTCACTTCGCTCGAGGGAAACTGAGAGAGCGACAGCG
ACAAAGACGAAGACATGGCGTGGTGTTCATTACGGTCGTTGAATGTCCCA
ACCATCGACATGGGCGCACTGCGCACCCGCTCTCGCTTAGCCGCCGTCGG
AATCGGCTGCGCCTCGGTCGCCGGGTCCAGCGTCTGGCGCTCTTCTTGCA
AGAAACACTCCACTCCCTTTGCTTGCTTATCCACTTCCGCCGTTTCTAAT
TTGAAGGAGGCTGTTGTGACTAACAAGGCTCCAGCAGCATTGGGACCTTA
TTCTCAGGCCATCAAAGCAAATAACCTCGTTTTTGTCTCTGGGGTTCTTG
GTTTAGTTCCAGAGACTGGGAAATTTGTCTCAGATACTATAGAGGACCAG
ACAGAGCAGGTTCTTAAAAATATTGGGGAAATACTGAAAGCTAGCGGCGC
TGACTATTCCTCTGTGGTTAAGACAACAATTTTGTTGGCAGACTTGAAAG
ACTTCAAGACAGTGAATGAGATCTATGCTAAATACTTTCCTTCACCAGCT
CCAGCACGTGCAACATATCAAGTAGCAGCACTGCCGTTGGATGCCAGGGT
TGAGATTGAATGCATTGCAGCCCTTCCCAATGCTTGATTGGGGTGAAATT
CTTCCAGGATAATCGAATAAAGGGGAAAGAAGCACACCTTTGAGGACAGG
ATTTTGGAGGCATTTTCTC
back to top