FC932600

Overview
NameFC932600
Unique NameFC932600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932600_ssr134 microsatellite FC932600_ssr134:134..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 50/121 (41.32%), Postives = 80/121 (66.12%), Query Frame = 3
Query:  207 LLTKDILCIRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYQE--GLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEV 563
            L  K  L  R+TLE YS E++ VA  L+  MA ALE++ +E+   + +   +  +R   YPPCP+P++VIG+T H+D  G+T+L++  ++ GLQ+ KDG+WV V P+  A + NIG ++E+
Sbjct:  159 LFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEI 279          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.249e-18
Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEV 563
            RET+E YS E++KVA  L   MA  L LE++ ++   +  ++     L P        +G++ H+D +G+TLL++   + GL + KD +WV + P+ GA V NIG ++E+
Sbjct:  166 RETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEI 274          

HSP 2 Score: 38.5058 bits (88), Expect = 1.249e-18
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 1
Query:   25 QKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFR 120
            QKLDW DM FL T P + R +  WP  P  FR
Sbjct:  135 QKLDWADMHFLITKPVQERNMRFWPTSPTSFR 166          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.624e-18
Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY--QEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPG-LQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV---KFTTKFSWLIGFRP 644
            RE  E Y++ +RKVA  + RS+++ L LE  E+ +A   ++ +Y ++   YPPCP P+  +G+  H D S ITLL     +P  +QV KDG W  V  +  AI+ +IG  +E+  + K +   +R    K+ T+ SW +   P
Sbjct:  173 REANEEYAKWLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLL-----VPNEVQVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRTTVNKYKTRMSWPVFLEP 310          

HSP 2 Score: 26.5646 bits (57), Expect = 1.624e-18
Identity = 10/31 (32.26%), Postives = 15/31 (48.39%), Query Frame = 1
Query:   28 KLDWNDMIFLRTLPHEIRKLDLWPEHPPKFR 120
            K  W D +F +  P        WP++PP +R
Sbjct:  143 KKGWVDHLFHKIWPPSAINYRYWPKNPPSYR 173          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.112e-18
Identity = 48/142 (33.80%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY--QEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV---KFTTKFSWLIGFRP 644
            RE  E Y + MR+V   + +S+++ L LE  E+ +A    E +Y ++   YPPCP P+  +G+  H D S IT+L+    + GLQV KDG W  V  +  A++ +IG  +E+  + K +   +R    K  T+ SW +   P
Sbjct:  169 REANEEYGKRMREVVDRIFKSLSLGLGLEGHEMIEAAGGDEIVYLLKINYYPPCPRPDLALGVVAHTDMSYITILVP-NEVQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEP 309          

HSP 2 Score: 26.5646 bits (57), Expect = 2.112e-18
Identity = 10/31 (32.26%), Postives = 15/31 (48.39%), Query Frame = 1
Query:   28 KLDWNDMIFLRTLPHEIRKLDLWPEHPPKFR 120
            K  W D +F +  P        WP++PP +R
Sbjct:  139 KKGWVDHLFHKIWPPSAVNYRYWPKNPPSYR 169          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.041e-18
Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYQ-EGL-YEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV---KFTTKFSWLIGFRP 644
            RE  E Y++ +  V   L R +++ L LE QE+  A   + L Y ++   YPPCP P+  +G+  H D S +T+L+   ++ GLQ  KDG+W  V  +  A+V +IG  ME+  + K    ++R    K  T+ SW +   P
Sbjct:  158 REANEEYAKHLHNVVEKLFRLLSLGLGLEGQELKKAAGGDNLEYLLKINYYPPCPRPDLALGVVAHTDMSTVTILVP-NDVQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKDKTRISWPVFLEP 298          

HSP 2 Score: 29.261 bits (64), Expect = 6.041e-18
Identity = 10/31 (32.26%), Postives = 16/31 (51.61%), Query Frame = 1
Query:   28 KLDWNDMIFLRTLPHEIRKLDLWPEHPPKFR 120
            K  W D +F +  P  +     WP++PP +R
Sbjct:  128 KKGWVDNLFNKIWPPSVVNYQFWPKNPPSYR 158          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.406e-16
Identity = 42/148 (28.38%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  237 ETLETYSEEMRKVATSLVRSMAMALELEAQEISD---AYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNR---VKFTTKFSWLIGFRPINMQIM 662
            E    Y++++R++AT +++ +++ L L+   +       +E L +++   YP CP+PE  +G+  H D S +T +L    +PGLQ+  +G+WVT   V  +IV +IG  +E+  + K +  ++R    K   + SW +   P   +I+
Sbjct:  171 EATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKII 317          

HSP 2 Score: 29.261 bits (64), Expect = 1.406e-16
Identity = 10/30 (33.33%), Postives = 16/30 (53.33%), Query Frame = 1
Query:   28 KLDWNDMIFLRTLPHEIRKLDLWPEHPPKF 117
            +L+W D  F    P + R L +WP+ P  +
Sbjct:  140 QLEWEDYFFHCVYPEDKRDLSIWPQTPADY 169          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.376e-16
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  237 ETLETYSEEMRKVATSLVRSMAMALELEAQEISD---AYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNR---VKFTTKFSWLIGFRP 644
            E    Y++ +R +AT + +++++ L LE   +       +E L +++   YP CP+PE  +G+  H D S +T +L    +PGLQ+  +G+WVT   V  +IV +IG  +E+  + K +  ++R    K   + SW +   P
Sbjct:  167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307          

HSP 2 Score: 30.4166 bits (67), Expect = 2.376e-16
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 1
Query:   28 KLDWNDMIFLRTLPHEIRKLDLWPEHPPKF 117
            +L+W D  F    P E R L +WP+ P  +
Sbjct:  136 QLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.093e-16
Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY--QEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV---KFTTKFSWLIGFRP 644
            R   E Y++ MR+V   L   +++ L +E   + +A    +  Y ++   YPPCP P+  +G+  H D S +T+L+    +PGLQV KD +W+    +  A+V +IG  +E+  + K +  ++R    K  T+ SW +   P
Sbjct:  156 RAVNEEYAKYMREVVDKLFTYLSLGLGVEGGVLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEP 296          

HSP 2 Score: 28.4906 bits (62), Expect = 3.093e-16
Identity = 11/31 (35.48%), Postives = 15/31 (48.39%), Query Frame = 1
Query:   28 KLDWNDMIFLRTLPHEIRKLDLWPEHPPKFR 120
            K  W D +F R  P        WP++PP +R
Sbjct:  126 KKSWVDHLFHRVWPPSSINYRFWPKNPPSYR 156          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.021e-16
Identity = 44/142 (30.99%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY--QEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV---KFTTKFSWLIGFRP 644
            RE  E Y++ ++ V  +L + +++ L+LE     D     + +Y ++   YPPCP P+  +G+  H D S IT+L+    +PGLQV KDG W     +  A++ +IG  +E+  + K +   +R    K  T+ SW +   P
Sbjct:  156 REANEEYAKRLQLVVDNLFKYLSLGLDLEPNSFKDGAGGDDLVYLMKINYYPPCPRPDLALGVA-HTDMSAITVLVP-NEVPGLQVYKDGHWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVNKEKTRMSWPVFLEP 295          

HSP 2 Score: 27.335 bits (59), Expect = 4.021e-16
Identity = 10/31 (32.26%), Postives = 15/31 (48.39%), Query Frame = 1
Query:   28 KLDWNDMIFLRTLPHEIRKLDLWPEHPPKFR 120
            K  W D +F +  P        WP++PP +R
Sbjct:  126 KKGWVDHLFHKIWPPSAINYQFWPKNPPAYR 156          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYQEG---LYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV 602
            R+ ++ ++E++ K+A  L+  +   + LE   +  A+       +  + + YPPCP PE + G+  H D  GI LL +   + GLQ+LKDG+W+ V P+  +IV NIG  +EV  + K +  M+RV
Sbjct:  111 RKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRV 236          
The following BLAST results are available for this feature:
BLAST of FC932600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SRG1_ARATH1.857e-2341.32Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.249e-1835.45S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
FLS_SOLTU1.624e-1834.97Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
FLS_PETHY2.112e-1833.80Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_MALDO6.041e-1833.80Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
LDOX_MALDO1.406e-1628.38Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_ARATH2.376e-1629.58Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
FLS_CITUN3.093e-1630.28Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
FLS_EUSGR4.021e-1630.99Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
ACCO_ACTDE1.425e-1534.131-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]

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Properties
Property NameValue
Genbank descriptionC34210D04EF PostHarveN Citrus clementina cDNA clone C34210D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932600 ID=FC932600; Name=FC932600; organism=Citrus clementina; type=EST; length=687bp
GAAAGCATTTGTCATCTCAGTCGACAAAAACTTGATTGGAATGACATGAT
CTTCCTCAGAACTCTGCCCCATGAAATCAGGAAGTTAGATTTATGGCCTG
AACACCCCCCAAAATTCAGGTTGATAATAATTTATAATAATAATAATCTT
CAGAATTAACTCATACTGAAGTCAAGACTTTTCTAGAGTGATGTCTTCTA
ATATGCTTATTGACAAAAGACATTCTGTGTATTAGAGAGACTTTGGAGAC
TTATTCTGAAGAGATGAGGAAAGTTGCCACTTCTTTAGTGAGGTCCATGG
CTATGGCACTTGAGCTTGAGGCTCAAGAAATCTCTGATGCTTACCAAGAA
GGACTGTATGAAGTGAGGACGACTTTGTATCCTCCTTGTCCTGAACCTGA
GCGGGTCATTGGGATTACACAACATGCTGATTACTCTGGGATTACTCTCT
TGCTCGAGTGTGGCAACATACCAGGGTTACAAGTCCTAAAGGATGGACAA
TGGGTCACCGTTATACCTGTAGATGGTGCAATTGTGGCAAACATCGGCCA
CATCATGGAGGTATGTTAAAGCACAAAAAAGAGGCAGTAAATGAATCGTG
TTAAGTTTACTACCAAGTTCTCTTGGTTAATAGGTTTTAGACCAATTAAT
ATGCAGATAATGAGCAATGGGATTTACAAGCACCAGA
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