FC932601

Overview
NameFC932601
Unique NameFC932601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14295 contig Ccv1_Contig14295:129..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.380e-78
Identity = 156/224 (69.64%), Postives = 174/224 (77.68%), Query Frame = 3
Query:    3 GNVKTLMPKPPSGLCVPLKVQQRNKPPQLTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKRWVKPSVAKNL 674
            GNVKTL+ KP   LC  LK+Q+     +++V+N+        + G     NVRFRL+NLGPQPGS          IAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRERKLPLKIL DGELS KL  KA AFSTSAKEKLE AGC+L VLPGRK+WVKPSVAKNL
Sbjct:   21 GNVKTLVAKPC--LCPCLKIQRTKL--RVSVVNKAASAYNVKSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVAKNL 236          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 9.997e-77
Identity = 152/228 (66.67%), Postives = 168/228 (73.68%), Query Frame = 3
Query:    3 GNVKTLMPKPPSGLCVPLKVQQRNKPPQ-----LTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKRWVKPSVAKN 671
            GNV  L   P   L + L    + +  Q     L V++Q           S  V   RFRL+NLGPQPGS          I+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPGRK+WVKPSVAKN
Sbjct:   29 GNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTA------ATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKN 250          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.415e-30
Identity = 78/158 (49.37%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.415e-30
Identity = 78/158 (49.37%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.729e-28
Identity = 72/148 (48.65%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAA 608
            +L+ + PQPGS          ++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++  +      PLK+LGDGE++  L  KA AFS SAKEK+ AA
Sbjct:    2 KLHEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILTSNDG----PLKVLGDGEITVPLKVKAAAFSNSAKEKITAA 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNS3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9311) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.950e-28
Identity = 75/156 (48.08%), Postives = 94/156 (60.26%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            RL +L P  G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   ++ G  V+L++L K G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T  VL
Sbjct:    4 RLESLKPNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFTLVNPKSFTVLNVSALNEIKAGSTVNLDSLVKDGIVT----SPKSPLKILGNGELKAKLTVQAAAFTASARAKIEAAGGTCEVL 149          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.950e-28
Identity = 75/153 (49.02%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTV 626
            L+ L PQ G+          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL   GLI  +      PLKILG+GEL+  L  KA AF+  A+EK+EAAG +  V
Sbjct:    3 LHELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLITTNDG----PLKILGNGELTIPLTIKAAAFTKGAQEKIEAAGGSCVV 146          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.852e-28
Identity = 74/155 (47.74%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            RLN++ PQ GS          I+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K PLKILG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:    2 RLNDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.031e-28
Identity = 72/149 (48.32%), Postives = 91/149 (61.07%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            RL ++ PQPGS          IAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++  +      PLKILGDGE+   L  +A A + SA+ K+EAAG
Sbjct:    2 RLEDIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTNDG----PLKILGDGEVGVPLTIRAAAITPSARAKVEAAG 142          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNP2 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.571e-28
Identity = 73/149 (48.99%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L+NL P+ GS          IAAGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+                 L D+ A       EV+LE+L   G++  +      PLK+LGDGELS  L   A AFS  AK K+EAAG
Sbjct:    2 KLSNLSPKAGSKKRRRRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFTIVNPKNFTIVNVGQLTDLPA-----NTEVTLESLMAAGIVTTNDG----PLKVLGDGELSVALKVTAAAFSNGAKAKIEAAG 141          
The following BLAST results are available for this feature:
BLAST of FC932601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK15_PEA2.380e-7869.6450S ribosomal protein L15, chloroplastic (Fragment... [more]
RK15_ARATH9.997e-7766.6750S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RL15_SYNP61.415e-3049.3750S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE71.415e-3049.3750S ribosomal protein L15 OS=Synechococcus elongat... [more]
RL15_MICAN1.729e-2848.6550S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_SYNS32.950e-2848.0850S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_CYAP72.950e-2849.0250S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_ANASP3.852e-2847.7450S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_SYNJA5.031e-2848.3250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNP26.571e-2848.9950S ribosomal protein L15 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC34210D05EF PostHarveN Citrus clementina cDNA clone C34210D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932601 ID=FC932601; Name=FC932601; organism=Citrus clementina; type=EST; length=754bp
AGGGCAATGTCAAAACCCTAATGCCAAAACCCCCATCAGGCCTTTGCGTC
CCTCTCAAAGTCCAACAAAGAAATAAACCACCCCAGCTCACTGTCTTAAA
CCAAGCTGCTTCGGCTTCTGCTTCAGCAACTGTTGGTTCGGGTCCCGTTA
CGAATGTACGGTTCCGGTTAAATAACCTGGGCCCACAACCGGGTTCGAGA
AAGAGAGGGAAGAGAAAGGGGAGAGGAATAGCAGCTGGGCAAGGTAACAG
CTGTGGGTTTGGAATGAGAGGTCAGAAATCGAGGTCTGGTCCTGGCGTTA
GAAAGGGTTTTGAAGGTGGTCAAATGCCTCTTTATCGTCGAATTCCTAAG
CTCCGTGGGATTGCCGGAGGTATGCATGCTGGGTTACCTAAGTATGTCCC
TGTTAACTTGAAAGACATAGAAGCAGCTGGTTTTCTAGAGGGGGATGAAG
TCTCACTAGAGACTTTGAAGAAGAAGGGCTTGATCAATCCCTCAGGAAGA
GAAAGGAAACTGCCTTTAAAGATTCTTGGTGATGGAGAATTAAGCACGAA
GCTGAACTTCAAGGCTCGTGCCTTCTCTACATCAGCAAAGGAGAAGCTTG
AAGCTGCAGGCTGTACCCTCACTGTCTTACCTGGCCGAAAGAGGTGGGTG
AAACCATCAGTAGCTAAGAACCTTGCACGAGCTGAAGAATACTTCGCCAA
GAAGAGAGCTGCTGCAGCTGCATCCGATTCACTTCAGCTTGAACACTTGG
NTTT
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