FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM2_ARATH (Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.212e-77
Identity = 146/187 (78.07%), Postives = 160/187 (85.56%), Query Frame = 3
Query:  147 ETNRLLPIPSPPS----STEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            E +RLLP P PPS    ST+ + E AF++ EKILIVD +S       GD  PPFSW+KLWLFTGPGFLMSIAFLDPGNLEGDLQ+GAIAGYSLLWLLMWAT MGLLIQ+LSARVGVATGRHLAELCR+EYP WAR+VLW MAE+ALIGADIQEVIGSAIAIQILS G LPLWAGV+ITA DCF+FLF
Sbjct:   12 EEDRLLP-PPPPSQSLPSTDSESEAAFETNEKILIVDFESPDDPTT-GDTPPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGRHLAELCRDEYPTWARYVLWSMAELALIGADIQEVIGSAIAIQILSRGFLPLWAGVVITASDCFLFLF 196          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM3_ARATH (Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.655e-72
Identity = 131/170 (77.06%), Postives = 148/170 (87.06%), Query Frame = 3
Query:  192 EDDEEVAFDSREKILIVDADSASTLN--VDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            E++EE A+D  EK+ IV  +    L   V     PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQ+GA+AGYSLLWLLMWAT MGLL+QLLSAR+GVATGRHLAELCR+EYP WAR VLW MAE+ALIG+DIQEVIGSAIAI+ILS+G+LPLWAGV+ITALDCF+FLF
Sbjct:   15 EEEEETAYDETEKVHIVRNEEEDDLEHGVGCGGAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCRDEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALDCFVFLF 184          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM4_ARATH (Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.094e-71
Identity = 135/186 (72.58%), Postives = 153/186 (82.26%), Query Frame = 3
Query:  144 NETNRLLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGD--QVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +ET+R  P+ +        EE A++  EK+LIV  D     + D D    P FSWKKLWLFTGPGFLMSIAFLDPGNLE DLQ+GAIAGYSL+WLLMWAT +GLLIQLLSAR+GVATGRHLAELCREEYP WAR VLW MAE+ALIGADIQEVIGSAIAI+ILS+G++PLWAGV+ITALDCFIFLF
Sbjct:    2 SETDRERPLLA-------SEERAYEETEKVLIVGIDEEEDADYDDDPGNSPKFSWKKLWLFTGPGFLMSIAFLDPGNLESDLQAGAIAGYSLIWLLMWATAIGLLIQLLSARLGVATGRHLAELCREEYPTWARMVLWIMAEIALIGADIQEVIGSAIAIKILSNGLVPLWAGVVITALDCFIFLF 180          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM5_ARATH (Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.217e-67
Identity = 130/203 (64.04%), Postives = 153/203 (75.37%), Query Frame = 3
Query:   96 MDSSETREGESGSKDSNETN---RLLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            M  S     E+  K  N++N   + L +P   S  E+DE        +IL V+ D   T     D VPPFSW KLW FTGPGFLMSIAFLDPGN+EGDLQ+GA+AGYSLLWLL+WATLMGLL+QLLSAR+GVATGRHLAE+CR EYP+WAR +LWFMAEVALIGADIQEVIGSAIA+QIL+ G LP+W GVIIT+ DCF+  +
Sbjct:    1 MTGSTVSRQENSPKRPNDSNGEFKRLLVPET-SQPEEDELHESPPENQILNVEEDRDKTY----DSVPPFSWAKLWKFTGPGFLMSIAFLDPGNIEGDLQAGAVAGYSLLWLLLWATLMGLLMQLLSARIGVATGRHLAEICRSEYPSWARILLWFMAEVALIGADIQEVIGSAIALQILTRGFLPIWVGVIITSFDCFLISY 198          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_DICDI (Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 97/168 (57.74%), Postives = 128/168 (76.19%), Query Frame = 3
Query:  267 NVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWS-EELE-LFCCIIALWLIVAG 764
            N+D       ++K LW FTGPGFLMSIA+LDPGNLE D+Q+GA+AGY LLW+L W+T++G  +Q+L++R+GV TG+HLAE CRE+YP   R +LW M E+A+IG+DIQEVIG+AIA+QILS+G +PLWAGV+ TA D F FLF   +   +LE  FC +IA+  I  G
Sbjct:   60 NIDKPDSKWINFKTLWAFTGPGFLMSIAYLDPGNLESDIQAGAMAGYQLLWVLFWSTVIGFWLQMLASRLGVVTGKHLAEHCREQYPKTPRLLLWLMTELAIIGSDIQEVIGTAIALQILSNGHIPLWAGVLFTAADTFTFLFLEKYGIRKLEAFFCSLIAIMAISFG 227          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM2_MOUSE (Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.933e-50
Identity = 108/211 (51.18%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   72 VDKTKKVKMDSSETREGESGSKDSNETNRLLPIPSPPSSTEDDEE---VAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +D  +K+  D +    G+S S  +   N      S P ST D EE     FD  EKI I + + +            FS++KLW FTGPGFLMSIA+LDPGN+E DLQSGA+AG+ LLW+L+ AT++GLL+Q L+AR+GV TG HLAE+C  +YP   R +LW M E+A+IG+D+QEVIGSAIAI +LS G +PLW GV+IT  D F+FLF
Sbjct:    3 LDPKEKMPDDGASGDHGDSASLGA--INPAYSNSSLPHSTGDSEEPFTTYFD--EKIPIPEEEYSC-----------FSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGSAIAINLLSAGRVPLWGGVLITIADTFVFLF 198          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM2_HUMAN (Natural resistance-associated macrophage protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 108/205 (52.68%), Postives = 137/205 (66.83%), Query Frame = 3
Query:   84 KKVKMDSSETREGESGSKDSNETNRLLPIPSPPSSTEDDEEV-AFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +K+  DS     GES S  +   N     PS   S  D EE  A    EKI I + + +            FS++KLW FTGPGFLMSIA+LDPGN+E DLQSGA+AG+ LLW+L+ ATL+GLL+Q L+AR+GV TG HLAE+C  +YP   R +LW M E+A+IG+D+QEVIGSAIAI +LS G +PLW GV+IT  D F+FLF
Sbjct:    7 QKMSDDSVSGDHGESASLGN--INPAYSNPSLSQSPGDSEEYFATYFNEKISIPEEEYSC-----------FSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGVLITIADTFVFLF 198          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MVL_DROME (Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.494e-49
Identity = 94/162 (58.02%), Postives = 124/162 (76.54%), Query Frame = 3
Query:  210 AFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            A+ S EK+LI D DS +           FS++KLW FTGPGFLMSIA+LDPGN+E D+QSGA A Y +LW+L+WAT++GLL+Q L+AR+GV TG HLAE+C  +Y    R++LW M E+A+IG+D+QEVIG+AIAI +LS+ V+PLW GV+IT +D F FLF
Sbjct:   53 AYFSDEKVLIPDDDSTNV---------GFSFRKLWAFTGPGFLMSIAYLDPGNIESDMQSGAAAKYKILWVLLWATVLGLLMQRLAARLGVVTGLHLAEMCYRQYKRLPRWILWIMIEIAIIGSDMQEVIGTAIAIYLLSNKVVPLWGGVLITIVDTFTFLF 205          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM2_RAT (Natural resistance-associated macrophage protein 2 OS=Rattus norvegicus GN=Slc11a2 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.549e-49
Identity = 107/211 (50.71%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   72 VDKTKKVKMDSSETREGESGSKDSNETNRLLPIPSPPSSTEDDEE---VAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +D  +K+  D +    G+S S  +   N      S P ST D EE     FD  EKI I + + +            FS++KLW FTGPGFLMSIA+LDPGN+E DLQSGA+AG+ LLW+L+ AT++GLL+Q L+AR+GV TG HLAE+C  +YP   R +LW M E+A+IG+D+QEVIGSAIAI +LS G +PL+ GV+IT  D F+FLF
Sbjct:    3 LDPEEKIPDDGASGDHGDSASLGA--INPAYSNSSLPHSTGDSEEPFTTYFD--EKIPIPEEEYSC-----------FSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGSAIAINLLSAGRVPLYGGVLITIADTFVFLF 198          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_CANFA (Natural resistance-associated macrophage protein 1 OS=Canis familiaris GN=SLC11A1 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 9.066e-47
Identity = 98/193 (50.78%), Postives = 127/193 (65.80%), Query Frame = 3
Query:  126 SGSKDSNETNR--LLPIPSPPSSTEDDEEVAFDS-REKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +G KD    +R     I  PPSS    E +      EKI I D +  +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FLF
Sbjct:    2 TGDKDPQSVSRPNYGSISHPPSSEPQQEPLRTTYLSEKIPIPDTEPGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITIVDTFFFLF 183          
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
NRAM2_ARATH2.212e-7778.07Metal transporter Nramp2 OS=Arabidopsis thaliana G... [more]
NRAM3_ARATH3.655e-7277.06Metal transporter Nramp3 OS=Arabidopsis thaliana G... [more]
NRAM4_ARATH3.094e-7172.58Metal transporter Nramp4 OS=Arabidopsis thaliana G... [more]
NRAM5_ARATH1.217e-6764.04Metal transporter Nramp5 OS=Arabidopsis thaliana G... [more]
NRAM1_DICDI4.645e-5157.74Metal transporter nramp1 homolog OS=Dictyostelium ... [more]
NRAM2_MOUSE3.933e-5051.18Natural resistance-associated macrophage protein 2... [more]
NRAM2_HUMAN5.136e-5052.68Natural resistance-associated macrophage protein 2... [more]
MVL_DROME1.494e-4958.02Protein Malvolio OS=Drosophila melanogaster GN=Mvl... [more]
NRAM2_RAT2.549e-4950.71Natural resistance-associated macrophage protein 2... [more]
NRAM1_CANFA9.066e-4750.78Natural resistance-associated macrophage protein 1... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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