FC932605

Overview
NameFC932605
Unique NameFC932605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15536 contig Ccv1_Contig15536:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_BACSU (GTP-binding protein typA/bipA homolog OS=Bacillus subtilis GN=typA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.208e-40
Identity = 91/224 (40.62%), Postives = 140/224 (62.50%), Query Frame = 2
Query:   11 SMMEKDFYLGRILTXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMA-ETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDM 679
            ++++ + Y+GRI              +V  +++   GT K    +V K+   +G   V I+ A AGD+++++GM   ++G TV   +    LP + +D PT+ MTF VN+SP AGR+G ++T  KI  RL S+ +T++++ V P  + + + V GRGEL L ILIENMRREG+EL VS P+V+ K  +GV+ EP+E V I+V EEH G VME++  RK E++DM
Sbjct:  212 ALLDYNDYVGRIGIGRVFRGTMKVGQQVSLMKL--DGTAK--SFRVTKIFGFQGLKRVEIEEAKAGDLVAVSGMEDINVGETVCPVDHQDPLPVLRIDEPTLQMTFVVNNSPFAGREGKYVTARKIEERLQSQLQTDVSLRVEPTASPDAWVVSGRGELHLSILIENMRREGYELQVSKPEVIIKEIDGVRCEPVERVQIDVPEEHTGSVMESMGARKGEMVDM 431          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_SYNY3 (GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain PCC 6803) GN=typA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.955e-38
Identity = 85/184 (46.20%), Postives = 117/184 (63.59%), Query Frame = 2
Query:  131 IEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDM 679
            I +GKV KL+  +G   + +  A AG I++IAG    +IG T+   +   ALP I++D PT+ MTF VNDSP AG++G  +T  +I  RL  E ETN+A+ V  G  AE + V GRGEL LGILIE MRREG+E  V+ P+V+Y+  NG   EP+E + ++V E  VG  +E L  R+ E+ DM
Sbjct:  246 IAKGKVSKLLGFEGLNRIELPEASAGYIVAIAGFADANIGETLTCPDEPQALPLIKVDEPTLQMTFSVNDSPFAGQEGKFVTSRQIRDRLNRELETNVALRVEDGESAEQFLVSGRGELHLGILIETMRREGYEFQVAQPQVIYREVNGQPCEPVEYLVLDVPEAAVGACIERLGQRRGEMQDM 429          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_HELPY (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 81/194 (41.75%), Postives = 118/194 (60.82%), Query Frame = 2
Query:  134 EEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            E G++ KL+   G     I++A AGDI++IAG     +G +V +      L  + L+ PT+S+ F VNDSPLAG +G H+T  K+  RL+ E +TN+A+         ++V GRGELQ+ IL EN+RREGFE S+S P+V+ K ENGVK EP E + I+  ++  G ++E L  RKAE+  M P+     R  +
Sbjct:  246 ENGRITKLIGFLGLARTEIENAYAGDIVAIAGFNAMDVGDSVVDPANPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEF 439          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_SHIFL (GTP-binding protein typA/bipA OS=Shigella flexneri GN=typA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 86/197 (43.65%), Postives = 121/197 (61.42%), Query Frame = 2
Query:  128 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+SM F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_HELPJ (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 80/194 (41.24%), Postives = 118/194 (60.82%), Query Frame = 2
Query:  134 EEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            E G++ KL+   G     I++A AGDI+++AG     +G +V +      L  + L+ PT+S+ F VNDSPLAG +G H+T  K+  RL+ E +TN+A+         ++V GRGELQ+ IL EN+RREGFE S+S P+V+ K ENGVK EP E + I+  ++  G ++E L  RKAE+  M P+     R  +
Sbjct:  246 ENGRITKLIGFLGLARTEIENAYAGDIVALAGFNAMDVGDSVVDPTNPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEF 439          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_HAEIN (GTP-binding protein typA/bipA homolog OS=Haemophilus influenzae GN=typA PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 88/195 (45.13%), Postives = 124/195 (63.59%), Query Frame = 2
Query:  128 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINV--IPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGR 706
            K  +G++ +++   G      D A AGDI++I G+ + +I  T+ +     ALP++ +D PT++M F VN SP AG++G ++T  +I  RL  E   N+A+ V   P   E + V GRGEL L +LIENMRREG+EL+VS PKV+Y+  +G K EP E+VTI+V E+H G VMEAL  RK EV DM  +P   GR
Sbjct:  251 KTRQGRIGQVLGHLGLQRYEEDVAYAGDIVAITGLGELNISDTICDINTVEALPSLTVDEPTVTMFFCVNTSPFAGQEGKYVTSRQILERLNKELVHNVALRVEETPNPDE-FRVSGRGELHLSVLIENMRREGYELAVSRPKVIYRDIDGKKQEPYEQVTIDVEEQHQGSVMEALGIRKGEVRDM--LPDGKGR 442          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_ECOLI (GTP-binding protein typA/BipA OS=Escherichia coli (strain K12) GN=typA PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 86/197 (43.65%), Postives = 121/197 (61.42%), Query Frame = 2
Query:  128 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+SM F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_ECOL6 (GTP-binding protein typA/bipA OS=Escherichia coli O6 GN=typA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 86/197 (43.65%), Postives = 121/197 (61.42%), Query Frame = 2
Query:  128 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+SM F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_ECO57 (GTP-binding protein typA/bipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 86/197 (43.65%), Postives = 121/197 (61.42%), Query Frame = 2
Query:  128 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+SM F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_ECO27 (GTP-binding protein typA/bipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=typA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 86/197 (43.65%), Postives = 121/197 (61.42%), Query Frame = 2
Query:  128 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+SM F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
The following BLAST results are available for this feature:
BLAST of FC932605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TYPA_BACSU7.208e-4040.63GTP-binding protein typA/bipA homolog OS=Bacillus ... [more]
TYPA_SYNY33.955e-3846.20GTP-binding protein TypA/BipA homolog OS=Synechocy... [more]
TYPA_HELPY2.564e-3741.75GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
TYPA_SHIFL4.373e-3743.65GTP-binding protein typA/bipA OS=Shigella flexneri... [more]
TYPA_HELPJ4.373e-3741.24GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
TYPA_HAEIN4.373e-3745.13GTP-binding protein typA/bipA homolog OS=Haemophil... [more]
TYPA_ECOLI4.373e-3743.65GTP-binding protein typA/BipA OS=Escherichia coli ... [more]
TYPA_ECOL64.373e-3743.65GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO574.373e-3743.65GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO274.373e-3743.65GTP-binding protein typA/bipA OS=Escherichia coli ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34210D09EF PostHarveN Citrus clementina cDNA clone C34210D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932605 ID=FC932605; Name=FC932605; organism=Citrus clementina; type=EST; length=736bp
CAATGCTGGTTCAATGATGGAAAAAGACTTCTATCTTGGGCGAATATTAA
CCGGTCGTGTTTCTTCTGGTGTTGTTTCTGTTGGTGACAAAGTACATGGA
CTACGAATCACTGATTCTGGGACTGAGAAGATTGAAGAAGGAAAGGTTAT
AAAGCTAATGAAAAAGAAAGGTACAGGCATGGTTCTAATTGATAGTGCTG
GAGCGGGTGACATTATCTCAATAGCAGGCATGACAAAACCATCAATAGGC
CATACAGTAGCAAATACAGAGGTTACAACTGCATTACCAACCATTGAGTT
GGACCCCCCAACCATTTCCATGACTTTTGGTGTCAATGACTCTCCATTGG
CTGGTCGTGATGGTACTCATTTGACTGGAGGAAAGATTGGTGCTCGGCTA
ATGTCTGAAGCTGAAACAAACCTTGCAATAAATGTAATTCCAGGCATGGC
TGAAACTTATGAGGTTCAGGGGAGGGGAGAACTTCAACTGGGTATATTAA
TCGAGAATATGAGGCGTGAAGGATTTGAGCTTTCTGTATCACCACCTAAA
GTTATGTATAAAACTGAGAATGGTGTAAAGCTCGAGCCAATTGAAGAAGT
GACTATCGAGGTTAACGAGGAACATGTGGGGTTGGTTATGGAAGCTCTCT
CTCACAGGAAAGCTGAAGTTATGGACATGGGTCCTGTCCCTGGAAGTGCT
GGCAGGACTAACTATCCTTAACTGTCATCAGGGGNC
back to top