FC932606

Overview
NameFC932606
Unique NameFC932606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15537 contig Ccv1_Contig15537:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932606 vs. ExPASy Swiss-Prot
Match: WSD1_ARATH (O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 55/173 (31.79%), Postives = 88/173 (50.87%), Query Frame = 2 
Query:   95 EPVSPIGQYFNSSTLSISILAVLELEV---PFDDSLAIPLLKDIFLPINPRFSSIMVV--EKNGVKHWKSVEVKLKNHVYVPNFPVGMSQQFYDKCLQDYLSKLSAEQMPQSQPLWEVHIVKYPTSNAASSVIFKLHHALGDGFSLMGALLSCLQRADDPSRPLTFPSVRMRP 598
            EP+SP+    +S    I I    +       F D +   L+        PRFSS M +  +K G   W  V++++ +H+ VP+      Q   D+ ++DY S ++   M  S+PLWE H++   TS A S  I K+HH++GDG SLM  LL+C ++  DP   ++  +   +P
Sbjct:   17 EPLSPMSHMLSSPNFFIVITFGFKTRCNRSAFVDGINNTLINA------PRFSSKMEINYKKKGEPVWIPVKLRVDDHIIVPDLEYSNIQN-PDQFVEDYTSNIANIPMDMSKPLWEFHLLNMKTSKAESLAIVKIHHSIGDGMSLMSLLLACSRKISDPDALVSNTTATKKP 182
The following BLAST results are available for this feature:
BLAST of FC932606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WSD1_ARATH4.431e-1731.79O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34210D10EF PostHarveN Citrus clementina cDNA clone C34210D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932606 ID=FC932606; Name=FC932606; organism=Citrus clementina; type=EST; length=686bp
GGTACTCAAAAGAAGGAAAAAAAAAAGAAGGAAAGGTTCAGGATCTAACA
CAAAACTGGAAATGGAGTGTGAGAAAGCTGATGAAGTGGTAGCAGAGCCT
GTGAGCCCAATTGGGCAATATTTCAATAGCTCTACTCTATCAATCTCCAT
TCTTGCTGTTTTGGAATTAGAAGTGCCCTTTGATGATTCGCTGGCTATTC
CGTTGCTAAAGGATATTTTCCTTCCCATCAACCCTCGCTTCTCCTCCATC
ATGGTTGTGGAAAAAAATGGAGTGAAACATTGGAAAAGCGTTGAAGTGAA
GCTCAAAAACCACGTCTATGTTCCAAATTTTCCCGTTGGCATGTCACAAC
AATTCTACGACAAGTGCCTGCAAGATTACTTATCAAAATTATCCGCGGAA
CAAATGCCTCAAAGCCAACCATTGTGGGAAGTTCACATAGTAAAATATCC
AACGAGCAATGCAGCAAGTAGTGTGATATTCAAGCTTCATCATGCACTTG
GCGACGGCTTCTCATTGATGGGAGCTCTTCTTTCATGTCTTCAAAGAGCC
GATGATCCTTCTCGCCCCTTGACATTTCCTAGTGTTCGAATGAGACCAGA
CATTAATGGCAGTAGTATATTCAAGAATGTACCTAAGTTTTTCAATACTG
TGTTCAATACAGCTTCAGATTTTTGTTGGAGCATGA
back to top