FC932611

Overview
NameFC932611
Unique NameFC932611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15539 contig Ccv1_Contig15539:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PDF1_SCHPO (Palmitoyl-protein thioesterase-dolichyl pyrophosphate phosphatase fusion 1 OS=Schizosaccharomyces pombe GN=pdf1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 52/194 (26.80%), Postives = 100/194 (51.55%), Query Frame = 2
Query:   74 ISFITVLLLFFFPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKGYCIEVGDGTWDS----WFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLCG-SGIFC-IIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNDSL 637
            IS   V L      S  +P ++ HG+GD  ++  + + ++ +   +    Y I VGD  ++     +   LE+Q + VC+ +     LS G+  +GLSQG L  R + + C+    +++ ++ G PH+G  ++P C  + + C  + ++++   ++  ++Q+H+  + Y +      KYLE  KFL  LNN+ L
Sbjct:    9 ISLDKVRLAINDGASEQLPVVIWHGLGDTPTSFTLTEVSQRVQKLTKGAVYAIRVGDNEFEDIKAGYLGKLEDQLDEVCDLIGNEDSLSNGFYALGLSQGGLFLRALAQTCDAA-KIRSLITLGSPHSGINTIPGCSPTNLICKAVVHSILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVL 201          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT1_CAEEL (Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 61/214 (28.50%), Postives = 96/214 (44.86%), Query Frame = 2
Query:   53 MAFRSVPISFITVLLLFFFPVSRSIPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVGDG-TWD---SWFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLC-GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNDSLIRGTHLQGTL 667
            M +  + +  + +    F   ++ +P ++ HG+GD C N      VK+  E      G   + +++G   T D    ++    E   + C K+    EL  GYN +G SQG    R V + C   PP+KN VS GG H G    P C G  I C     LI    Y  +VQ  +  + Y   PN + +Y ++  FL  +NN++    T+ +  L
Sbjct:    1 MRYFPLLLCLLAITTAEFRNATKQVPVVMWHGMGDCCCNPLSMGSVKKLFEE--QIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMACIKIKNDPELKNGYNAIGFSQGAQFLRAVAQRCPN-PPMKNLVSVGGQHQGVFGAPYCIGDNIMCNGVRRLIDLGAYLPFVQKRVVQAQYWHDPNQVEEYKKRSIFLADINNENNNNPTYKRNLL 211          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT3_DICDI (Palmitoyl-protein thioesterase 3 OS=Dictyostelium discoideum GN=ppt3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   77 SFITVLLLFFFPVSRSIPFIVLHGIGD-QCSNQGVKQFTENLSSFSGSKGYCIEVGDGTWDSWFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLCGSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNDSLIRGT 649
            S I ++ L    VS + P +++HG+   + S + +K + E   S        +E+G+G +DS F  ++ Q E   + V    +L+ G+N++G SQG LI R  V+     P V N++S  GP  G    P     +     + ++    Y   +Q  L+ + Y K P+ I KYLE+  FL  +NN+  ++ T
Sbjct:    6 SLILLIALAIALVSATRPVVLMHGVTTGKESMEPLKSWIEE--SIPDIYVLNVEIGNGAFDSIFTTMDSQIEEFAQVVQADPKLANGFNLIGFSQGTLIARAFVQ-RYNNPQVYNYISWNGPQGGQFGTPF----VNIPWVDKVLGTIPYEKTIQKKLSVAEYWKDPHRIDKYLERSIFLADINNEYQVKNT 190          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT1_MACFA (Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 53/179 (29.61%), Postives = 79/179 (44.13%), Query Frame = 2
Query:  125 IPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNND 631
            +P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q   VC+ + K  +L +GYN +G SQG    R V + C   PP+ N +S GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N +
Sbjct:   33 LPLVIWHGMGDSCCNPLSMGAIKKMVEK--KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQTLAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE 208          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT1_HUMAN (Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 53/179 (29.61%), Postives = 79/179 (44.13%), Query Frame = 2
Query:  125 IPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNND 631
            +P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q   VC+ + K  +L +GYN +G SQG    R V + C   PP+ N +S GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N +
Sbjct:   33 LPLVIWHGMGDSCCNPLSMGAIKKMVEK--KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE 208          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT1_BOVIN (Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=PPT1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 51/179 (28.49%), Postives = 79/179 (44.13%), Query Frame = 2
Query:  125 IPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNND 631
            +P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q   VC+ + K  +L +GYN +G SQG    R V + C   PP+ N +S GG H G   +P C   S   C      + A  Y+  +Q+ L  + Y   P     Y     FL  +N +
Sbjct:   33 LPLVIWHGMGDSCCNPLSMGAIKKMVEK--KIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE 208          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT1_MOUSE (Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 52/185 (28.11%), Postives = 80/185 (43.24%), Query Frame = 2
Query:  128 PFIVLHGIGDQCSNQG----VKQFTENLSSFSGSKGYCIEVGDGTWD----SWFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNDSLIRGTH 652
            P ++ HG+GD C N      +K+  E      G     +E+G    +    S+F  +  Q  +VC+ + K  +L +GYN +G SQG    R V + C   PP+   +S GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N +  +  ++
Sbjct:   34 PLVIWHGMGDSCCNPMSMGVIKKMVEK--EIPGIYVLSLEIGKNMMEDVENSFFLNVNVQVNMVCQILEKDPKLQQGYNAIGFSQGGQFLRAVAQRCP-TPPMMTLISVGGQHQGVFGLPRCPGESSHICDFIRKSLNAGAYSKLVQERLVQAQYWHDPIKESVYRNYSIFLADINQERCVNESY 215          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT1_DROME (Palmitoyl-protein thioesterase 1 OS=Drosophila melanogaster GN=Ppt1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 52/186 (27.96%), Postives = 84/186 (45.16%), Query Frame = 2
Query:  125 IPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKGYC--IEVGDGTWDSW----FKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLCGSGIF--CIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNDSLIRGTHLQ 658
            +P ++ HG+GD C          NL       GY   +++G      W    F    EQ + VC+++ + + L++GY+ +G SQG    R V E C   PP++N ++ GG H G   +P+C +     C     L+    Y+  VQ  L  + Y   P    KY     FL  +NN+  I   +++
Sbjct:   41 LPVVLWHGMGDTCCVPFSLGAIMNLIVEQTKGGYVRSLQIGGNVLIDWQSGFFIHPNEQVDYVCKQLLQDEHLAKGYHAIGFSQGGQFLRAVAERCP-NPPMRNLITLGGQHQGIFGLPMCPTLTEKPCDYITRLLDNAAYAPEVQKALVQATYWHDPIMENKYRLGSTFLADINNELFINKFYIE 225          
BLAST of FC932611 vs. ExPASy Swiss-Prot
Match: PPT1_RAT (Palmitoyl-protein thioesterase 1 OS=Rattus norvegicus GN=Ppt1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 52/190 (27.37%), Postives = 81/190 (42.63%), Query Frame = 2
Query:  128 PFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKV*KMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSSGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNDSLIRGTHLQGTL 667
            P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q  + C+ + K  +L  GYN +G SQG    R V + C   PP+   +S GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N +  I  ++ +  +
Sbjct:   34 PLVIWHGMGDSCCNPMSMGSIKKMVEK--EIPGIYVLSLEIGKNMVEDVENSFFLNVNLQVGMACQILEKDPKLQHGYNAIGFSQGGQFLRAVAQRCP-TPPMMTLISVGGQHQGVFGLPRCPGESSHICDFIRKSLNAGAYSKVVQERLVQAQYWHDPIKEEVYRNCSIFLADINQERHINESYKENLM 220          
The following BLAST results are available for this feature:
BLAST of FC932611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PDF1_SCHPO4.611e-1926.80Palmitoyl-protein thioesterase-dolichyl pyrophosph... [more]
PPT1_CAEEL2.530e-1728.50Palmitoyl-protein thioesterase 1 OS=Caenorhabditis... [more]
PPT3_DICDI8.999e-1529.17Palmitoyl-protein thioesterase 3 OS=Dictyostelium ... [more]
PPT1_MACFA1.535e-1429.61Palmitoyl-protein thioesterase 1 OS=Macaca fascicu... [more]
PPT1_HUMAN1.535e-1429.61Palmitoyl-protein thioesterase 1 OS=Homo sapiens G... [more]
PPT1_BOVIN9.949e-1428.49Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=... [more]
PPT1_MOUSE2.216e-1328.11Palmitoyl-protein thioesterase 1 OS=Mus musculus G... [more]
PPT1_DROME6.449e-1327.96Palmitoyl-protein thioesterase 1 OS=Drosophila mel... [more]
PPT1_RAT1.437e-1227.37Palmitoyl-protein thioesterase 1 OS=Rattus norvegi... [more]
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Properties
Property NameValue
Genbank descriptionC34210E03EF PostHarveN Citrus clementina cDNA clone C34210E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932611 ID=FC932611; Name=FC932611; organism=Citrus clementina; type=EST; length=677bp
GAGGGAAAAAAATAAAATAAAAAAGGAACCTTTTGATCGCATCAGCATTT
TCATGGCTTTTCGCTCAGTACCCATTTCTTTCATTACCGTCTTGCTCTTG
TTTTTCTTTCCAGTTTCTCGTTCGATTCCCTTCATAGTACTCCATGGTAT
TGGAGACCAGTGTTCCAATCAAGGAGTGAAACAGTTCACCGAAAATCTTA
GCAGTTTTTCAGGTTCTAAAGGATATTGCATAGAAGTTGGGGATGGGACA
TGGGATTCCTGGTTTAAGCCTCTGGAGGAACAGACAGAAATTGTTTGTGA
AAAGGTGTAGAAAATGAAAGAACTGAGTGAAGGTTACAACATAGTTGGTC
TCTCCCAGGGTAACTTAATAGGTCGAGGTGTTGTAGAGTTCTGCGAAGGT
GGACCTCCGGTTAAGAACTTTGTTTCCTCGGGAGGGCCTCATGCTGGTAC
TGCTTCTGTGCCCCTTTGTGGTTCTGGTATCTTTTGCATAATTGCAAACA
ACCTAATCAAGGCAGAGGTCTACAGTGACTATGTCCAAGATCATTTGGCT
CCCAGTGGATATCTTAAATTTCCAAATGACATCCCCAAGTATTTGGAAAA
ATGTAAGTTCCTTCCAAAGCTTAACAACGACTCCCTGATAAGAGGAACTC
ACTTACAAGGAACGCTTCACTGCTGCA
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