FC932612

Overview
NameFC932612
Unique NameFC932612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9401 contig Ccv1_Contig9401:4..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932612 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.721e-58
Identity = 121/200 (60.50%), Postives = 143/200 (71.50%), Query Frame = 1
Query:   76 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYG 663
            ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFEG YG
Sbjct:    5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYG 197          
BLAST of FC932612 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.257e-55
Identity = 112/169 (66.27%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  160 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYG 663
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YG
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYG 193          
BLAST of FC932612 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.776e-48
Identity = 108/199 (54.27%), Postives = 129/199 (64.82%), Query Frame = 1
Query:   76 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYG 663
            +SA SL+ I                  LLG   SF    +NL +S+   D S  SS   K N+T         S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YG
Sbjct:    3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYG 192          
BLAST of FC932612 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.501e-46
Identity = 97/169 (57.40%), Postives = 119/169 (70.41%), Query Frame = 1
Query:  157 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYG 663
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YG
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYG 193          
The following BLAST results are available for this feature:
BLAST of FC932612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH3.721e-5860.50Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH2.257e-5566.27Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH7.776e-4854.27Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH2.501e-4657.40Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34210E04EF PostHarveN Citrus clementina cDNA clone C34210E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932612 ID=FC932612; Name=FC932612; organism=Citrus clementina; type=EST; length=665bp
GACGCTCCATTTCATTTCTTGAATCATCGCCATCCAGATAACTTTACTCA
TTCAATATTCTGCAAATCAATAATGGCCTCTGCAAGCTCTCTCAAGCCCA
TCTCTTATTCTCTGAACCTCCCTAACTCGAGATCCTCTTCTTCCGAAACC
CAAAGGTTGCTAGGTTTCAAATCATCTTTTTCCTCTCATCATCGAAACCT
CAGTCTCTCAACAACCCACCAAGATGTCTCAAGAAGAAGCTCCAAGAACA
ACGTCACCACCAAAGCTTTCTTCTTCAACAAACCCAGCAGCCAACCAGAT
TCTTCCAGGCCTGCTAATAATAAGGTTCAAGAACTGTTCGTGTATGAGAT
CAACGAGCGGGACAGAAACAGCCCGGCAATTCTGAAGCTAAGCCAAAAGC
CTGAACATCTCACAATCGGCGACCTTGTGCCCTTCACGAACAAGCTCTAC
ACCGGCGACTTACAGAAGCGCATTGGCATCACGGCGGGGCTCTGCGTGTT
GATCAAGCACGAACCGGAGAAGAAGGGTGACCGGTTTGAAGCGATTTACA
GCTTCTACTTCGGTGACTACGGTCACATATCCGTGCAGGGAGCTTATTTG
ACTTACGAAGACACGTACTTGGCCGTCACCGGTGGCTCCGGGATCTTTGA
GGGCGTGTACGGACA
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