FC932644
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30 Identity = 73/166 (43.98%), Postives = 96/166 (57.83%), Query Frame = 2 Query: 119 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616 M+ +DMSLDDIIK N+ G NR APY+ K WQHD+F G +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y V LDG+PM I++V + I Sbjct: 1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 154
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29 Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = 2 Query: 245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANV 649 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +V Sbjct: 67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSV 192
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29 Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = 2 Query: 245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANV 649 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +V Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSV 195
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3) HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29 Identity = 66/127 (51.97%), Postives = 89/127 (70.08%), Query Frame = 2 Query: 245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATR 625 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ Sbjct: 69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ 187
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3) HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29 Identity = 69/135 (51.11%), Postives = 92/135 (68.15%), Query Frame = 2 Query: 245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI-ATRTAAPAAN 646 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I A R A + N Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVN 196
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29 Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 2 Query: 245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I Sbjct: 73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28 Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2 Query: 245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I Sbjct: 70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27 Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 2 Query: 245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I Sbjct: 69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184 The following BLAST results are available for this feature:
BLAST of FC932644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932644 ID=FC932644; Name=FC932644; organism=Citrus clementina; type=EST; length=704bpback to top |