FC932644

Overview
NameFC932644
Unique NameFC932644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932644_ssr62 microsatellite FC932644_ssr62:62..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10204 contig Ccv1_Contig10204:20..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 73/166 (43.98%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  119 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616
            M+  +DMSLDDIIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 154          
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = 2
Query:  245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANV 649
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +V
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSV 192          
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = 2
Query:  245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANV 649
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +V
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSV 195          
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 66/127 (51.97%), Postives = 89/127 (70.08%), Query Frame = 2
Query:  245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATR 625
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ 187          
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 69/135 (51.11%), Postives = 92/135 (68.15%), Query Frame = 2
Query:  245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI-ATRTAAPAAN 646
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I A R  A + N
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVN 196          
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188          
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of FC932644 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  245 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 616
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184          
The following BLAST results are available for this feature:
BLAST of FC932644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
REFP2_MOUSE4.803e-3043.98RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_TAEGU1.397e-2951.11THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_BOVIN1.825e-2951.11THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE2.383e-2951.97THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN2.383e-2951.11THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_XENTR9.057e-2952.42THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA2.635e-2851.61THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA1.708e-2750.81THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionC34210G12EF PostHarveN Citrus clementina cDNA clone C34210G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932644 ID=FC932644; Name=FC932644; organism=Citrus clementina; type=EST; length=704bp
GTTCGAGGAAACCCTAAATTTCCTCCTCAGCCTTCCTCTCTTTCTACTTT
TCCTCTTAATTTCTCTCTCTCTTATTACGATTTTATCTTTGATTTTCTAT
TTTTTGTTATAGTAAAAAATGTCAAGCGCTTTAGATATGTCTCTTGACGA
TATCATCAAGAACAACAAAAAGTCTGGATCTGGCAACTTCCGGGGCCGGG
GTCGAGGATCCGGACCCGGCCCTGCTCGTCGCATCCCCAATCGTGGTGCA
AACCGTGTGGCGCCGTATACCACCGCCAAAGCGCCGGAGACGACGTGGCA
GCACGATATGTTTGCAGATCAGGTGAGTGCTTTCCCGGTACAGCAGGCGG
GGCGGGCTTCAGCTATAGAGACTGGAACGAAGCTGTACATATCAAATCTG
GATTACGGTGTCTCTAATGAAGACATCAAGGAACTGTTTTCTGAAGTTGG
TGACTTGAAGCGGTACTCAATCCATTATGATAGAAGTGGGAGATCAAAGG
GAACGGCAGAGGTTGTCTATTCACGACGAGCAGATGCTGTGGCTGCAGTC
AAGAGATACAACACTGTGCAGCTTGATGGGAAGCCGATGAAAATTGAGAT
TGTGGGAACAAACATTGCAACCCGTACTGCAGCTCCAGCTGCTAATGTCA
AACTTTGGAAATTCAATGGTGTTCCTAGAGGTGGACAGGAAGAGGTGGTG
CATT
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