FC932646

Overview
NameFC932646
Unique NameFC932646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14283 contig Ccv1_Contig14283:18..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_SOYBN (Magnesium-chelatase subunit chlI, chloroplastic OS=Glycine max GN=CHLI PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.032e-75
Identity = 156/212 (73.58%), Postives = 168/212 (79.25%), Query Frame = 1
Query:   85 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALFAVTNVATEVNSVEQAQK-RSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            MAS LGT SS A+L SR                    GQNYGR+FYGGIGI    GRA  +VTNVATEVNSVEQAQ   SKESQRPVYPF+AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKVV GDPYNSDP+DPE MG+EVRE V++GEELS+  +KINMVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    1 MASALGT-SSIAVLPSR--YFSSSSSKPSIHTLSLTSGQNYGRKFYGGIGIHGIKGRAQLSVTNVATEVNSVEQAQSIASKESQRPVYPFSAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVAGDPYNSDPQDPEFMGVEVRERVLQGEELSVVLTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 209          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_TOBAC (Magnesium-chelatase subunit chlI, chloroplastic OS=Nicotiana tabacum GN=CHLI PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.071e-64
Identity = 138/216 (63.89%), Postives = 163/216 (75.46%), Query Frame = 1
Query:   85 MASVLGTRSSSA--ILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVE-QAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            MAS+LGT SS+A  ILAS PL                  GQ+ GR+FYGGI +  K GR+ F  A++NVATE+N ++ + +   +ESQRPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKV+ GDP+NSDP+D E M  EVR+ +  G++L I+ +KINMVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    1 MASLLGTSSSAAAAILASTPLSSRSCKPAVFSLFPSS--GQSQGRKFYGGIRVPVKKGRSQFHVAISNVATEINLLKNRVRNLLEESQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVISGDPFNSDPDDQEVMSAEVRDKLRSGQQLPISRTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 214          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_ARATH (Magnesium-chelatase subunit chlI, chloroplastic OS=Arabidopsis thaliana GN=CHLI PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 139/215 (64.65%), Postives = 156/215 (72.56%), Query Frame = 1
Query:   85 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVEQAQKR--SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            MAS+LGT SSSAI AS  L                  G+ +G +   GI I  K  R+ +  +V NVATE+NS EQ   +  SK+S RPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP I VV GDPYNSDP DPE MG+EVRE V KGE++ +  +KINMVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    1 MASLLGT-SSSAIWASPSLSSPSSKPSSSPICFRP--GKLFGSKLNAGIQIRPKKNRSRYHVSVMNVATEINSTEQVVGKFDSKKSARPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEINVVAGDPYNSDPIDPEFMGVEVRERVEKGEQVPVIATKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 212          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_CHLRE (Magnesium-chelatase subunit chlI, chloroplastic OS=Chlamydomonas reinhardtii GN=CHLI PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.835e-48
Identity = 100/154 (64.94%), Postives = 115/154 (74.68%), Query Frame = 1
Query:  256 ALFAVTNVATEVNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            AL      ATEV + E    +     RP++PFTAIVGQ+EMKL L+LNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP ++VV  DP+NSDP DPE M  EVR  V  GE+L ++  KI MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:   50 ALLVRAAAATEVKAAEGRTGKELGQARPIFPFTAIVGQDEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEMQVVANDPFNSDPTDPELMSEEVRNRVKAGEQLPVSSKKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 203          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_NEPOL (Magnesium-chelatase subunit chlI OS=Nephroselmis olivacea GN=chlI PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.338e-48
Identity = 100/133 (75.19%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  319 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            + E  RPV+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NS P DPE M  EVRE V +GE +  T +KI MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    7 TSEQARPVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIEVVENDPFNSHPYDPELMSDEVREKVHRGESIRTTTTKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 139          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_CHLVU (Magnesium-chelatase subunit chlI OS=Chlorella vulgaris GN=chlI PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.106e-48
Identity = 99/135 (73.33%), Postives = 111/135 (82.22%), Query Frame = 1
Query:  313 KRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            + S E  RPV+PFTAIVGQEEMKL L+LNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NSDP+DPE M  EVR  + + E + IT  KI+MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    6 ENSLEQARPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIQVVADDPFNSDPKDPELMSQEVRGRLQRKETVPITTKKISMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 140          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_MESVI (Magnesium-chelatase subunit chlI OS=Mesostigma viride GN=chlI PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.717e-46
Identity = 93/143 (65.03%), Postives = 114/143 (79.72%), Query Frame = 1
Query:  289 VNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            +++++  +  +K  +RPVYPFTAIVGQEEMKL L+LNVIDP IGGVMIMGDRGTGKSTT+R+LVDLLP I+VV  DP+NSDP DP+ M  EVRE +   +E+    +KI +VDLPLGATEDRVCGTIDIE+ L    +AFEPG
Sbjct:    1 MSTIDLIKNVTKREERPVYPFTAIVGQEEMKLALILNVIDPDIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVTNDPFNSDPRDPDLMSDEVREKINNKQEVPTIKTKIKIVDLPLGATEDRVCGTIDIERALNEGVKAFEPG 143          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_ANASP (Magnesium-chelatase subunit chlI OS=Anabaena sp. (strain PCC 7120) GN=chlI PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.996e-46
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 1
Query:  328 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            ++R V+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I VV  DP+NSDP DP+ M  EVR+    G E+ I F K+ MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:   11 ARRVVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIPVVANDPFNSDPSDPDLMSDEVRQKSGTGAEIPIEFKKVQMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPG 140          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_SYNY3 (Magnesium-chelatase subunit chlI OS=Synechocystis sp. (strain PCC 6803) GN=chlI PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.423e-45
Identity = 94/131 (71.76%), Postives = 105/131 (80.15%), Query Frame = 1
Query:  325 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            +++R V+PFTAIVGQ+EMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I+VV  DP+NS P DPE M  EVR  V   E LSI   K+ MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:   10 KTRRVVFPFTAIVGQDEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIEVVANDPFNSSPSDPEMMSEEVRIRVDSQEPLSIVKKKVTMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPG 140          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_CYAPA (Magnesium-chelatase subunit chlI OS=Cyanophora paradoxa GN=chlI PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.099e-44
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  322 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            K + RP++PFTAIVGQEEMKL LLLN++DPKIGGVMIMGDRGTGKSTT+R+L DLLP I +V  DP+NS P D E M   VR+    GEE+S+   K+ M+DLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    2 KNNNRPIFPFTAIVGQEEMKLALLLNIVDPKIGGVMIMGDRGTGKSTTIRALADLLPEIDIVANDPFNSHPTDIELMSDNVRQLKENGEEISLIQKKVPMIDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 133          
The following BLAST results are available for this feature:
BLAST of FC932646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHLI_SOYBN1.032e-7573.58Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_TOBAC1.071e-6463.89Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_ARATH1.309e-6264.65Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_CHLRE1.835e-4864.94Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_NEPOL5.338e-4875.19Magnesium-chelatase subunit chlI OS=Nephroselmis o... [more]
CHLI_CHLVU9.106e-4873.33Magnesium-chelatase subunit chlI OS=Chlorella vulg... [more]
CHLI_MESVI1.717e-4665.03Magnesium-chelatase subunit chlI OS=Mesostigma vir... [more]
CHLI_ANASP4.996e-4672.31Magnesium-chelatase subunit chlI OS=Anabaena sp. (... [more]
CHLI_SYNY39.423e-4571.76Magnesium-chelatase subunit chlI OS=Synechocystis ... [more]
CHLI_CYAPA2.099e-4467.42Magnesium-chelatase subunit chlI OS=Cyanophora par... [more]

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Properties
Property NameValue
Genbank descriptionC34210H02EF PostHarveN Citrus clementina cDNA clone C34210H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932646 ID=FC932646; Name=FC932646; organism=Citrus clementina; type=EST; length=725bp
GATGTAATCTGTGATGGTCAACAAAACCAGTGAACACAAACTCTCTCACC
CTAGTAACAGTAACACCTACATTTGCGCACGGGCATGGCGTCCGTGTTAG
GAACTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCA
GCATCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCA
GAATTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGG
GGCGGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTT
GAGCAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATT
TACTGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTTTTGTTAAATG
TGATTGATCCCAAAATTGGGGGTGTTATGATTATGGGTGATAGAGGAACG
GGGAAATCCACCACTGTCAGGTCCTTGGTAGATTTACTCCCCGTAATCAA
GGTAGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCA
TGGGTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATT
ACATTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGA
CAGGGTCTGTGGGACGATTGACATTGAGAAGCTCTAACGGAGGTGTCAAG
CATTTGAGCCTGGCTTCTGCTAAGC
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